View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_high_3 (Length: 609)
Name: NF0857_high_3
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 151 - 560
Target Start/End: Original strand, 5679284 - 5679692
Alignment:
| Q |
151 |
ttagattattacacttcagagtcgttgaatctaaatgcaaacgatgcagtagaattgtgcaagttgcactcagattcaacaaccatttaactactagaat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5679284 |
ttagattattacacttcagagtcgttgaatctaaatgcaagcgatgcagttgaattgtgcaagttgcactcagattcaacgaccatttaactactagaat |
5679383 |
T |
|
| Q |
251 |
tgcggaaagatttcaaacactacttgaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
350 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5679384 |
tgcggaaagattacaaacactactagaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
5679483 |
T |
|
| Q |
351 |
tatagcacaactcaacatagcattgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
450 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5679484 |
tatagcacaactcaacatagca-tgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
5679582 |
T |
|
| Q |
451 |
acatactcctagcatctatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
550 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5679583 |
acatactcctagcatccatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
5679682 |
T |
|
| Q |
551 |
gcagaataat |
560 |
Q |
| |
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||| |||||| |
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| T |
5679683 |
gcataataat |
5679692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 151 - 560
Target Start/End: Original strand, 5704336 - 5704744
Alignment:
| Q |
151 |
ttagattattacacttcagagtcgttgaatctaaatgcaaacgatgcagtagaattgtgcaagttgcactcagattcaacaaccatttaactactagaat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5704336 |
ttagattattacacttcagagtcgttgaatctaaatgcaagcgatgcagttgaattgtgcaagttgcactcagattcaacgaccatttaactactagaat |
5704435 |
T |
|
| Q |
251 |
tgcggaaagatttcaaacactacttgaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
350 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704436 |
tgcggaaagattacaaacactactagaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
5704535 |
T |
|
| Q |
351 |
tatagcacaactcaacatagcattgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
450 |
Q |
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| T |
5704536 |
tatagcacaactcaacatagca-tgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
5704634 |
T |
|
| Q |
451 |
acatactcctagcatctatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
550 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704635 |
acatactcctagcatccatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
5704734 |
T |
|
| Q |
551 |
gcagaataat |
560 |
Q |
| |
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||| |||||| |
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| T |
5704735 |
gcataataat |
5704744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 5679133 - 5679258
Alignment:
| Q |
29 |
accaagtacgccccttcctttccaaaggttttatattttaagggggtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5679133 |
accaagtacgccccttcctttccaaaggttttatattttaagggggtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaa |
5679232 |
T |
|
| Q |
129 |
agcaagagagtctctcaaactattag |
154 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
5679233 |
agcaagagggtctctcaaactattag |
5679258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 5704185 - 5704310
Alignment:
| Q |
29 |
accaagtacgccccttcctttccaaaggttttatattttaagggggtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704185 |
accaagtacgccccttcctttccaaaggttttatattttaagggggtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaa |
5704284 |
T |
|
| Q |
129 |
agcaagagagtctctcaaactattag |
154 |
Q |
| |
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|||||||| ||||||||||||||||| |
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| T |
5704285 |
agcaagagggtctctcaaactattag |
5704310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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