View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0857_high_33 (Length: 347)
Name: NF0857_high_33
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_33 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 34247977 - 34248295
Alignment:
| Q |
29 |
attgttaagcttgctccttttggaatccgatttactagttgtctgaagtccaaatctatacagtatacgacaatgatagaaataaaagtattagttttat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34247977 |
attgttaagcttgctccttttggaatccgatttactagttgtctgaagtccaaatctatacagtatacgacaatgatagaaataaaagtattagttttat |
34248076 |
T |
|
| Q |
129 |
acatagtttctaaatggcatttgggttgtcacatagttcaaatatctaagaaaattctatagttcacatagactactctgcaattttaaatgtgannnnn |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34248077 |
acatagtttctaaatggcatttgggttgtcacatagttcaaatatctaagaaaattctatagttcacatagactactctgcaattttaaatgtgattttt |
34248176 |
T |
|
| Q |
229 |
nnncatatgaacttgagctagtaacatcataaacaattttgtaactaaatcgcgacataagttttatcgcgagagaagttgatacaaaccagtgataaga |
328 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34248177 |
tttcatatgaactcgagctagtaacatcataaacaattttgtaactaaatcgcgacataagttttatcaagagagaagttgatacaaaccagtgataaga |
34248276 |
T |
|
| Q |
329 |
ttgaagtcacaaggcacaa |
347 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34248277 |
ttgaagtcacaaggcacaa |
34248295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1963 times since January 2019
Visitors: 6152