View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0857_high_65 (Length: 309)
Name: NF0857_high_65
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_65 |
 | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 8723948 - 8724219
Alignment:
| Q |
9 |
agcataggtgttaattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctatcgatgttt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8723948 |
agcagaggtgttaattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctgtcgatgttt |
8724047 |
T |
|
| Q |
109 |
ggaatgcggctaatgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatattatattccatttgatgaaaatattgtctacaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8724048 |
ggaatgcggctaatgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatattatattccatttgttgaaaatattgtctacaac |
8724147 |
T |
|
| Q |
209 |
ccagatagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724148 |
ccagatagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
8724219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 13066271 - 13066001
Alignment:
| Q |
9 |
agcataggtgttaattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctatcgatgttt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
13066271 |
agcagaggtgttaattgcccttcaaattgtgttatgtgtgaagatccc-atgaagacaattatcatattttgtttcactgtaaggcagctgtcgatgttt |
13066173 |
T |
|
| Q |
109 |
ggaatgcggctaatgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatattatattccatttgatgaaaatattgtctacaac |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
13066172 |
ggaatgcggctaatgtttggcacctgatatctccatctttggtcctgtttgataatgcatcagatattatattccatttgttgagaatattgtctacaac |
13066073 |
T |
|
| Q |
209 |
ccagatagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13066072 |
ccaaatagagaatattgtcactattatttggagtatctggaaagctagaaaccttaagttgtggcaacaagt |
13066001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 42764733 - 42764800
Alignment:
| Q |
213 |
atagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||| |||||||| ||||| || ||| ||||||||||||| |
|
|
| T |
42764733 |
atagagaatattgttactattatgtggagtatatggaaagcaaggaatctgaagctgtggcaacaagt |
42764800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 15789286 - 15789552
Alignment:
| Q |
14 |
aggtgttaattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctatcgatgtttggaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
15789286 |
aggtgttaattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggttgtcgatgtttggaat |
15789385 |
T |
|
| Q |
114 |
gcggctaatgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatattatattccatttgatgaaaatattgtctacaacccaga |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15789386 |
gcggctaatgtttggcatctgatctctccatctttggacctgtttgataatgcatcagatattatattccatttgttgaaaatattgtctacaacccaga |
15789485 |
T |
|
| Q |
214 |
tagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15789486 |
tagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
15789552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 8968990 - 8968935
Alignment:
| Q |
222 |
attgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaaca |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||||| |
|
|
| T |
8968990 |
attgtcactactatatggagtatatggaaggctaggaacctcaagctttggcaaca |
8968935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 3065 - 2794
Alignment:
| Q |
9 |
agcataggtgttaattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctatcgatgttt |
108 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||| | |
|
|
| T |
3065 |
agcagaggtgttaattgcccttcgaattgtgttatgtgtgaagatccacatgaagacagttatcatattttgtttcattgtaaggcggctgtcgatgtgt |
2966 |
T |
|
| Q |
109 |
ggaatgcggctaatgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatattatattccatttgatgaaaatattgtctacaac |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
2965 |
ggaatgcggctaatgtttggcacctgatatctccatctttggtcctgtttgataatacatcagatattatattccatttgttgagaatattgtctacaac |
2866 |
T |
|
| Q |
209 |
ccagatagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2865 |
ccagatagagaatattgtcactattatttggagtatctggaaagctagaaaccttaagttgtggcaacaagt |
2794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 13783178 - 13783380
Alignment:
| Q |
78 |
ttgtttcactgtaaggcggctatcgatgtttggaatgcggctaatgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatatta |
177 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13783178 |
ttgtttcactgtaaggcggctgtcgatgtttggaatgcggctaatgtttggcacctgatatctccatctttggacctgtttgataatgcatcagatatta |
13783277 |
T |
|
| Q |
178 |
tattccatttgatgaaaatattgtctacaacccagatagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaaca |
277 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13783278 |
tattccatttgttgagaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggcaaca |
13783377 |
T |
|
| Q |
278 |
agt |
280 |
Q |
| |
|
||| |
|
|
| T |
13783378 |
agt |
13783380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 33972360 - 33972401
Alignment:
| Q |
35 |
ttgtgttatgtgtgaagatccccatgaagacagttatcatat |
76 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
33972360 |
ttgtgttaggtgtgaagacccccatgaagatagttatcatat |
33972401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 277
Target Start/End: Complemental strand, 20089829 - 20089588
Alignment:
| Q |
36 |
tgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctatcgatgtttggaatgcggctaatgtttggcatctga |
135 |
Q |
| |
|
||||||||||||||||| ||| ||||||| | |||||||| | ||| | || |||||||| || ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
20089829 |
tgtgttatgtgtgaagacccctatgaagataactatcatatgctcttttattgcaaggcggccattgatgtttggaatgcggctaatgtttagcacctga |
20089730 |
T |
|
| Q |
136 |
tatctccatctttggacctgtttgataatgcatcagatattatattccatttgatgaaaatattgtctacaacccagatagagaatattgtcactactat |
235 |
Q |
| |
|
| ||||||||| || | | |||||||||||||||| |||| ||||| || || | ||| |||||||| |||| | |||| |||||| || | || |
|
|
| T |
20089729 |
tctctccatctctgaatcagtttgataatgcatcatatatcatatttaatctgttacaaaagttgtctactgcccaaactgagactattgttaccataat |
20089630 |
T |
|
| Q |
236 |
atggagtatctggaaagctaggaaccttaagttgtggcaaca |
277 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
20089629 |
gtggagtatctggaaagctagaaaccttaatttgtggcaaca |
20089588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 25552712 - 25552767
Alignment:
| Q |
222 |
attgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaaca |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||||| |
|
|
| T |
25552712 |
attgtcactactatatggagtatatggaaggctaggaacctcaagctttggcaaca |
25552767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 17458685 - 17458726
Alignment:
| Q |
44 |
gtgtgaagatccccatgaagacagttatcatatcttgtttca |
85 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
17458685 |
gtgtgaagatccccatgaagatagctaccatatcttgtttca |
17458726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 7994431 - 7994686
Alignment:
| Q |
21 |
aattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctatcgatgtttggaatgcggcta |
120 |
Q |
| |
|
|||||||| ||| |||||| || |||||||| ||||||||||| || |||||||| ||||| || ||| || ||| |||||||||||| ||| | |
|
|
| T |
7994431 |
aattgcccatcagcttgtgtcatatgtgaaga-ccccatgaagatagctatcatataccttttcattgcaagacgaatattgatgtttggaatatggcca |
7994529 |
T |
|
| Q |
121 |
atgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatattatattccatttgatgaaaatattgtctacaacccagatagagaa |
220 |
Q |
| |
|
|||||||||| ||||| ||||||||| || | | |||||||||||| | ||||| ||||| || | || ||| | |||||||||||||| |||| |
|
|
| T |
7994530 |
atgtttggcacctgatttctccatctctgaatcaatttgataatgcacccgatatcatatttaatcttttgcaaaagctatctacaacccagatcgagac |
7994629 |
T |
|
| Q |
221 |
tattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaaca |
277 |
Q |
| |
|
|||||| || | || |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
7994630 |
tattgttaccataatgtggagtatctggaaagctagaaaccttaaattgtggcaaca |
7994686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 11247859 - 11247917
Alignment:
| Q |
222 |
attgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
|||||||||| ||| |||||||| |||||| |||||||||||| |||||| ||||||| |
|
|
| T |
11247859 |
attgtcactattatttggagtatatggaaaagtaggaaccttaaattgtggaaacaagt |
11247917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 3988797 - 3988829
Alignment:
| Q |
248 |
gaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
3988797 |
gaaagataggaaccttaagttgtggcaacaagt |
3988829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 27071816 - 27071883
Alignment:
| Q |
213 |
atagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaacaagt |
280 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||| |||||||| ||||| | ||| ||||||||||||| |
|
|
| T |
27071816 |
atagagaatattgttactattatgtggagtatatggaaagcaaggaatatgaagctgtggcaacaagt |
27071883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 31425906 - 31425967
Alignment:
| Q |
216 |
gagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaaca |
277 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| || |||||||||||||| || ||||| |
|
|
| T |
31425906 |
gagaatattgtcactataatgtggagtatttggaaggccaggaaccttaagttatgacaaca |
31425967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 29600471 - 29600526
Alignment:
| Q |
222 |
attgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaaca |
277 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||| ||| | |||||||| |
|
|
| T |
29600471 |
attgtcactaccatatggagtatatggaaggctaggaacctcaagctatggcaaca |
29600526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 22161007 - 22161065
Alignment:
| Q |
15 |
ggtgttaattgcccttcaaattgtgttatgtgtgaagatccccatgaagacagttatca |
73 |
Q |
| |
|
||||||||||| |||||| | ||||| | |||||||||||||| ||||||||| ||||| |
|
|
| T |
22161007 |
ggtgttaattgtccttcagagtgtgtcaggtgtgaagatccccgtgaagacagctatca |
22161065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 25595615 - 25595566
Alignment:
| Q |
36 |
tgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttca |
85 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||| | |||||||| |
|
|
| T |
25595615 |
tgtgttatgtgtgaggatccccacgaagatagttatcatttgttgtttca |
25595566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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