View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_high_90 (Length: 249)
Name: NF0857_high_90
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_90 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 33903886 - 33903784
Alignment:
| Q |
91 |
attatactatcaataatttatcagggtcttcttacaaggagagctatatggaataatttatctcatcaattcggttcatatctatcaaaagctatattgc |
190 |
Q |
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| T |
33903886 |
attatactatcaataatttatcagggtcttcttacaaggagagctatatggaataatttatctcatcaattcggttcatatctatcaaaagctatattgc |
33903787 |
T |
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| Q |
191 |
atg |
193 |
Q |
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||| |
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| T |
33903786 |
atg |
33903784 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 33904173 - 33904111
Alignment:
| Q |
16 |
attggtagagaatatgttggtgtttcacaaccaagtcttggtaatgctccaataccatgtgca |
78 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
33904173 |
attggtagagatattgttggtgtttcccaaccaagtcttggtagtgctccaataccgtgtgca |
33904111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 148558 - 148486
Alignment:
| Q |
16 |
attggtagagaatatgttggtgtttcacaaccaagtcttggtaatgctccaataccatgtgc-atgtggtggg |
87 |
Q |
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| T |
148558 |
attggtagagatattgttggtgtttcagaaccaagtcttggtaatgctccaataccgtgtgcaatgtggtggg |
148486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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