View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0857_high_91 (Length: 242)

Name: NF0857_high_91
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0857_high_91
NF0857_high_91
[»] chr7 (4 HSPs)
chr7 (1-215)||(41663924-41664134)
chr7 (4-41)||(8770441-8770478)
chr7 (4-41)||(44963894-44963931)
chr7 (136-164)||(26932936-26932964)
[»] scaffold0460 (1 HSPs)
scaffold0460 (7-41)||(8632-8666)
[»] chr4 (2 HSPs)
chr4 (7-41)||(47302694-47302728)
chr4 (4-41)||(30891228-30891265)
[»] chr1 (2 HSPs)
chr1 (7-41)||(20487643-20487677)
chr1 (4-41)||(2247343-2247380)
[»] chr8 (2 HSPs)
chr8 (4-41)||(42444311-42444348)
chr8 (4-41)||(43921428-43921465)
[»] chr5 (1 HSPs)
chr5 (4-41)||(41802405-41802442)
[»] scaffold0005 (1 HSPs)
scaffold0005 (4-32)||(271041-271069)
[»] chr6 (2 HSPs)
chr6 (4-32)||(27109077-27109105)
chr6 (4-32)||(27150874-27150902)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 41663924 - 41664134
Alignment:
Q  1 accatcatttttatgaaataaagagttatttgatgatattttattataaagtatatacataagtatagcaaaaattgtaatttataatcattttatatcc 100  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  41663924 accatcgtttttatgaaataaagagctatttgatgatattttattatagagtacatacataactatagcaaaaattgtaatttataatcattttatatcc 41664023  T
Q  101 ctcagaaaatcattttatagttaatattcattatcgcatgacttcaagagtcatatttaatacatgatagatagttgtggagaataaattcaagagtcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||||| ||||||||||||    
T  41664024 ctcagaaaatcattttatagttaatattcattatcgcatgacttcaaaagtcatatttaatacat----gatagttgtggagaataagttcaagagtcgt 41664119  T
Q  201 gcatgtagttggttg 215  Q
    |||||||||||||||    
T  41664120 gcatgtagttggttg 41664134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 8770441 - 8770478
Alignment:
Q  4 atcatttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  8770441 atcatttttatgaaataaagagttgtttgttgatattt 8770478  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 44963894 - 44963931
Alignment:
Q  4 atcatttttatgaaataaagagttatttgatgatattt 41  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  44963894 atcatttttatgaaataaaaagttatttgttgatattt 44963931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 26932936 - 26932964
Alignment:
Q  136 gcatgacttcaagagtcatatttaataca 164  Q
    |||||||||||||||||||||||||||||    
T  26932936 gcatgacttcaagagtcatatttaataca 26932964  T

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Target: scaffold0460 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 8632 - 8666
Alignment:
Q  7 atttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||||||| ||||||||    
T  8632 atttttatgaaataaagagttatttgttgatattt 8666  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 47302728 - 47302694
Alignment:
Q  7 atttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||||||| ||||||||    
T  47302728 atttttatgaaataaagagttatttgttgatattt 47302694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 30891228 - 30891265
Alignment:
Q  4 atcatttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  30891228 atcatttttatgaaataaagagctatttgttgatattt 30891265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 20487643 - 20487677
Alignment:
Q  7 atttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||||||| ||||||||    
T  20487643 atttttatgaaataaagagttatttgttgatattt 20487677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 2247380 - 2247343
Alignment:
Q  4 atcatttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  2247380 atcatttttatgaaataaagagctatttgttgatattt 2247343  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 42444311 - 42444348
Alignment:
Q  4 atcatttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  42444311 atcatttttatgaaataaagagctatttgttgatattt 42444348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 43921465 - 43921428
Alignment:
Q  4 atcatttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  43921465 atcatttttatgaaataaagagctatttgttgatattt 43921428  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 41802442 - 41802405
Alignment:
Q  4 atcatttttatgaaataaagagttatttgatgatattt 41  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  41802442 atcatttttatgaaataaagagctatttgttgatattt 41802405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 271041 - 271069
Alignment:
Q  4 atcatttttatgaaataaagagttatttg 32  Q
    |||||||||||||||||||||||||||||    
T  271041 atcatttttatgaaataaagagttatttg 271069  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 27109077 - 27109105
Alignment:
Q  4 atcatttttatgaaataaagagttatttg 32  Q
    |||||||||||||||||||||||||||||    
T  27109077 atcatttttatgaaataaagagttatttg 27109105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 27150874 - 27150902
Alignment:
Q  4 atcatttttatgaaataaagagttatttg 32  Q
    |||||||||||||||||||||||||||||    
T  27150874 atcatttttatgaaataaagagttatttg 27150902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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