View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0857_high_92 (Length: 242)

Name: NF0857_high_92
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0857_high_92
NF0857_high_92
[»] chr7 (5 HSPs)
chr7 (1-213)||(41663735-41663948)
chr7 (158-213)||(41663377-41663432)
chr7 (1-84)||(8770379-8770462)
chr7 (4-90)||(30936097-30936183)
chr7 (155-188)||(41663584-41663617)
[»] chr5 (4 HSPs)
chr5 (1-90)||(29744216-29744305)
chr5 (4-90)||(14967548-14967634)
chr5 (4-90)||(13091230-13091316)
chr5 (4-89)||(9589525-9589610)
[»] chr8 (1 HSPs)
chr8 (4-90)||(17642390-17642476)
[»] chr4 (3 HSPs)
chr4 (52-94)||(56361314-56361356)
chr4 (4-90)||(31908759-31908845)
chr4 (14-90)||(11109599-11109675)
[»] chr3 (3 HSPs)
chr3 (4-90)||(9252170-9252256)
chr3 (52-90)||(27647845-27647883)
chr3 (4-90)||(52082046-52082132)
[»] chr1 (2 HSPs)
chr1 (4-90)||(50239280-50239366)
chr1 (1-90)||(2247359-2247448)
[»] chr6 (2 HSPs)
chr6 (4-90)||(31644413-31644499)
chr6 (1-70)||(20469059-20469128)
[»] chr2 (1 HSPs)
chr2 (1-95)||(19268564-19268658)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 41663948 - 41663735
Alignment:
Q  1 ctctttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtttccatcaaca 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  41663948 ctctttatttcataaaaacgatggttgatttgtagaaatttgaagcaaaaataccaatacactttaatttgcgagtgtaccgtagaagtttccatcaaca 41663849  T
Q  101 tttaagtttttaggttaattttttccttgagagacatgtatgtca-nnnnnnnctttcaaattctctcaatgatcataaaatatactttctagacggtta 199  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  41663848 tttaagttttcaggttaactttttccttgagagacatgtatgtcattttttttctttcaaattctctcaatgatcataaaatatactttctagacggtta 41663749  T
Q  200 tcaaacattgattt 213  Q
    ||||||||||||||    
T  41663748 tcaaacattgattt 41663735  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 41663432 - 41663377
Alignment:
Q  158 aaattctctcaatgatcataaaatatactttctagacggttatcaaacattgattt 213  Q
    ||||||||| |||||||||||||||||||||||||   ||||||||||||||||||    
T  41663432 aaattctcttaatgatcataaaatatactttctaggttgttatcaaacattgattt 41663377  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8770462 - 8770379
Alignment:
Q  1 ctctttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgta 84  Q
    |||||||||||||||||||||| ||| |||| ||||  |||||||||| | || |  |||||||||||||||| ||| ||||||    
T  8770462 ctctttatttcataaaaatgatagttaatttatagatttttgaagcaagagtatcggtacaccttaatttgcgggtgtaccgta 8770379  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 30936183 - 30936097
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||| |||| ||| |||| || |  ||||||| || | ||||  |||||||||||||||| ||| ||||||||||||    
T  30936183 tttatttcataaaattgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagtt 30936097  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 41663617 - 41663584
Alignment:
Q  155 ttcaaattctctcaatgatcataaaatatacttt 188  Q
    |||||||||||||||||||||||||| |||||||    
T  41663617 ttcaaattctctcaatgatcataaaacatacttt 41663584  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 29744216 - 29744305
Alignment:
Q  1 ctctttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||||||||||| ||| |||| || |  |||||||||||| ||||  ||||| |||||||| ||||| |||||| |||||    
T  29744216 ctctttatttcataaaaatgatagttaatttataaatttttgaagcaaaagtaccggtacactttaatttgtgagtgtaccgtataagtt 29744305  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 14967548 - 14967634
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    ||||||||||||||||||| ||| |||| || |  ||||||| || | |||| ||||||||||||||||  ||| ||||||||||||    
T  14967548 tttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccgatacaccttaatttgcaggtgtaccgtagaagtt 14967634  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 13091230 - 13091316
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    ||||||||||||||||||| ||| |||| || |  ||||||| || | ||||  ||||||||||||| || ||| ||||||||||||    
T  13091230 tttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttacgggtgtaccgtagaagtt 13091316  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 9589525 - 9589610
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagt 89  Q
    ||||||||||||||||||| ||| |||| || |  ||||||| || | |||| ||||||||||||||| |  || |||||||||||    
T  9589525 tttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccgatacaccttaatttgtggatgtaccgtagaagt 9589610  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 17642390 - 17642476
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    ||||||||||||||||||| ||| |||| || |  ||||||| || | ||||  |||||||||||||||| ||| ||||||||||||    
T  17642390 tttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagtt 17642476  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 56361356 - 56361314
Alignment:
Q  52 taccaatacaccttaatttgcgagtgcaccgtagaagtttcca 94  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  56361356 taccaatacaccttaatttgcgggtgtaccgtagaagtttcca 56361314  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 31908759 - 31908845
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||| |||| ||| |||| || |  ||||||| || | ||||  |||||||||||||||| ||| ||||||||||||    
T  31908759 tttatttcataaaattgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagtt 31908845  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 11109675 - 11109599
Alignment:
Q  14 aaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    ||||||||| ||| |||| || |||||| |||| | | ||||  |||||||||||||||| ||| ||||||||||||    
T  11109675 aaaaatgatagttaatttataaaaattttaagcgagagtaccggtacaccttaatttgcgggtgtaccgtagaagtt 11109599  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 9252170 - 9252256
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||| |||| ||| |||| |||| || |||||||| | ||||  ||||||| ||||| |||||| ||||||||||||    
T  9252170 tttatttcataaaattgatcgttaatttatagatatatgaagcaagagtaccggtacacctcaatttacgagtgtaccgtagaagtt 9252256  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 27647845 - 27647883
Alignment:
Q  52 taccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  27647845 taccaatacaccttaatttgcgggtgtaccgtagaagtt 27647883  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 52082132 - 52082046
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||||| || ||| |||| || |  ||||||| || | ||||  |||||||||||||||| ||| ||||||||||||    
T  52082132 tttatttcataaaaataatagttcatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagtt 52082046  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 50239366 - 50239280
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    ||||||||||||||||||| ||| |||| || |  ||||||| || | ||||  |||||||||||||||| ||| ||||||||||||    
T  50239366 tttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagtt 50239280  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2247359 - 2247448
Alignment:
Q  1 ctctttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||||||||||| ||| || | ||||  ||| |||  ||| ||||  |||||||||||||| | ||| ||||||||||||    
T  2247359 ctctttatttcataaaaatgatagttaatatatagatttttaaagttaaagtaccggtacaccttaatttgtgggtgtaccgtagaagtt 2247448  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 31644499 - 31644413
Alignment:
Q  4 tttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtt 90  Q
    |||||||||||||| |||| |||  ||| ||||  | |||||||| | |||| |||||||| ||||| |||||| ||||||||||||    
T  31644499 tttatttcataaaattgattgttagtttatagatttatgaagcaagagtaccgatacacctcaatttacgagtgtaccgtagaagtt 31644413  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 20469128 - 20469059
Alignment:
Q  1 ctctttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaattt 70  Q
    |||||||||||||||||||||| ||| |||| ||||  ||||||| || | ||||  |||||||||||||    
T  20469128 ctctttatttcataaaaatgatagttaatttatagatttttgaagtaagagtacccgtacaccttaattt 20469059  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19268658 - 19268564
Alignment:
Q  1 ctctttatttcataaaaatgatggttgatttgtagaaatttgaagcaaaaataccaatacaccttaatttgcgagtgcaccgtagaagtttccat 95  Q
    |||||||||||||||||||||| ||| ||||||| |  | |||| ||| |||||  |||||||| |||||| ||||  ||| |||||||| ||||    
T  19268658 ctctttatttcataaaaatgatcgttaatttgtaaatttatgaaacaataatactgatacacctcaatttgtgagtataccatagaagttcccat 19268564  T

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