View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0857_low_11 (Length: 567)

Name: NF0857_low_11
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0857_low_11
NF0857_low_11
[»] chr6 (2 HSPs)
chr6 (16-565)||(20601607-20602155)
chr6 (329-437)||(34764547-34764655)
[»] chr8 (3 HSPs)
chr8 (36-542)||(2307376-2307882)
chr8 (36-542)||(2312570-2313076)
chr8 (44-379)||(25817122-25817457)
[»] chr2 (3 HSPs)
chr2 (88-226)||(29221925-29222063)
chr2 (88-226)||(29335224-29335362)
chr2 (122-398)||(22993465-22993741)
[»] chr1 (3 HSPs)
chr1 (122-226)||(29458691-29458795)
chr1 (122-398)||(8321225-8321501)
chr1 (313-437)||(29458480-29458604)
[»] chr5 (2 HSPs)
chr5 (125-278)||(18110132-18110284)
chr5 (122-389)||(29737574-29737841)
[»] chr3 (1 HSPs)
chr3 (122-398)||(492407-492683)
[»] chr4 (1 HSPs)
chr4 (122-398)||(28401400-28401676)
[»] scaffold1235 (1 HSPs)
scaffold1235 (313-434)||(1073-1194)


Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Original strand, 20601607 - 20602155
Alignment:
Q  16 agtgtcgaagaagcactaagcaggccaaagtggaaagaagccatggatgcagaattcaaagctctaacaacaaatcaaacttggacactggtaccacttc 115  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20601607 agtgtcgaagaagcactaagaag-ccaaagtggaaagaagccatggatgcagaattcaaagctctaacaacatatcaaacttggacactggtaccacttc 20601705  T
Q  116 aggggaaagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaagg 215  Q
    || ||||||||||||||| |||||  ||||| || ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||    
T  20601706 agaggaaagaaaacatcacagacttaaaatgcgtctttaaaattaagtacaaggtagatggctcaattgaaagaagaaaagcaagattagttgccaaagg 20601805  T
Q  216 ttttcaacaaaatgcaggtctagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaat 315  Q
    ||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||| |||| ||||||||||||||||||| | | |||||||||||    
T  20601806 ttttcaacaaaatgcaggtctagactatgctgagacctttagtcatgtgatcaaatccaacactataagaattgtcctaaccattgaaatacatttaaat 20601905  T
Q  316 tgggaagttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaaggctatatagatccagcca 415  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  20601906 tgggaagttaggcaattagacataaataatgcattcttgaatgacaatctcaaagaaattgtatttatgcatcaaccagaaggctatatagatccagcca 20602005  T
Q  416 aatcttatcacatatgcaagttgaccaaggtgatctatggcttgaagcaggccccaagggcatggtatgacagtttaaagcatactttattaggttgggg 515  Q
    || |||||||||||||||||||||| || | |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||    
T  20602006 aaccttatcacatatgcaagttgactaaagcgatctatggcctgaagcaggccccgagggcctggtatgacagtttaaagcatactctactaggttgggg 20602105  T
Q  516 ttttcaaaataccaaaagtgattcatccctctttgttcttaaaggaacca 565  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  20602106 ttttcaaaataccaaaagtcattcatccctctttgttcctaaaggaacca 20602155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 437
Target Start/End: Complemental strand, 34764655 - 34764547
Alignment:
Q  329 aattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaaggctatatagatccagccaaatcttatcacat 428  Q
    |||| |||||||||||||| ||| | |||||| | || || || ||||||||||||  |||||| ||||| ||| ||||||| || ||| |  |||||||    
T  34764655 aattggacataaataatgctttcctaaatggacacctaaaggagactgtatttatgtttcaaccagaagggtatgtagatcctgcaaaaccaaatcacat 34764556  T
Q  429 atgcaagtt 437  Q
     ||||||||    
T  34764555 ttgcaagtt 34764547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 36 - 542
Target Start/End: Original strand, 2307376 - 2307882
Alignment:
Q  36 caggccaaagtggaaagaagccatggatgcagaattcaaagctctaacaacaaatcaaacttggacactggtaccacttcaggggaaagaaaacatcata 135  Q
    ||||||| | ||||||||||| ||||||||||||| ||| |||||||  |  ||  |||| ||| || |||||||| |||| ||  ||||||| |||||     
T  2307376 caggccagaatggaaagaagcaatggatgcagaatacaaggctctaatgaacaacaaaacatgggcattggtaccatttcatggacaagaaaatatcatt 2307475  T
Q  136 gactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttcaacaaaatgcaggtc 235  Q
    || || || ||| | |  ||||| || ||||||||||||||| | ||||| || || ||||| ||| | ||||| | ||||||||||||||  || ||      
T  2307476 gattcaaagtggatctacaaaacaaaatacaaggcagatggcacaattgagaggaggaaagcgagacttgttgctagaggttttcaacaaacagctggat 2307575  T
Q  236 tagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaagttaggcaattaga 335  Q
    | || |||||||| || ||||| || ||  ||||| | ||||||||||||||  | ||| | || |  |||||| | |||||||||||||| ||| ||||    
T  2307576 tggattatgatgaaacatttagcccagttgtcaaagcaagcactgtaagaatcattctatctattgttgtacatctcaattgggaagttagacaactaga 2307675  T
Q  336 cataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaaggctatatagatccagccaaatcttatcacatatgcaag 435  Q
     ||||||||||| ||||||||||| || |||||||||||||| || ||||||||||| ||||| || ||||||  | ||||| |  ||||||||||||      
T  2307676 tataaataatgctttcttgaatggcaacctcaaagaaactgttttcatgcatcaacctgaagggtacatagataaaaccaaaccacatcacatatgcaga 2307775  T
Q  436 ttgaccaaggtgatctatggcttgaagcaggccccaagggcatggtatgacagtttaaagcatactttattaggttggggttttcaaaataccaaaagtg 535  Q
    ||||||||||  || |||||||| ||||||||||||||||| |||||||||||||||| ||| || |||||   |||||| |||||||| ||||| ||||    
T  2307776 ttgaccaaggcaatatatggcttaaagcaggccccaagggcttggtatgacagtttaaggcacacattattgacttggggatttcaaaacaccaagagtg 2307875  T
Q  536 attcatc 542  Q
    | |||||    
T  2307876 actcatc 2307882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 36 - 542
Target Start/End: Original strand, 2312570 - 2313076
Alignment:
Q  36 caggccaaagtggaaagaagccatggatgcagaattcaaagctctaacaacaaatcaaacttggacactggtaccacttcaggggaaagaaaacatcata 135  Q
    ||||||| | ||||||||||| ||||||||||||| ||| |||||||  |  ||  |||| ||| || |||||||| |||| ||  ||||||| |||||     
T  2312570 caggccagaatggaaagaagcaatggatgcagaatacaaggctctaatgaacaacaaaacatgggcattggtaccatttcatggacaagaaaatatcatt 2312669  T
Q  136 gactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttcaacaaaatgcaggtc 235  Q
    || || || ||| | |  ||||| || ||||||||||||||| | ||||| || || ||||| ||| | ||||| | ||||||||||||||  || ||      
T  2312670 gattcaaagtggatctacaaaacaaaatacaaggcagatggcacaattgagaggaggaaagcgagacttgttgctagaggttttcaacaaacagctggat 2312769  T
Q  236 tagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaagttaggcaattaga 335  Q
    | || |||||||| || ||||| || ||  ||||| | ||||||||||||||  | ||| | || |  |||||| | |||||||||||||| ||| ||||    
T  2312770 tggattatgatgaaacatttagcccagttgtcaaagcaagcactgtaagaatcattctatctattgttgtacatctcaattgggaagttagacaactaga 2312869  T
Q  336 cataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaaggctatatagatccagccaaatcttatcacatatgcaag 435  Q
     ||||||||||| ||||||||||| || |||||||||||||| || ||||||||||| ||||| || ||||||  | ||||| |  ||||||||||||      
T  2312870 tataaataatgctttcttgaatggcaacctcaaagaaactgttttcatgcatcaacctgaagggtacatagataaaaccaaaccacatcacatatgcaga 2312969  T
Q  436 ttgaccaaggtgatctatggcttgaagcaggccccaagggcatggtatgacagtttaaagcatactttattaggttggggttttcaaaataccaaaagtg 535  Q
    ||||||||||  || |||||||| ||||||||||||||||| |||||||||||||||| ||| || |||||   |||||| |||||||| ||||| ||||    
T  2312970 ttgaccaaggcaatatatggcttaaagcaggccccaagggcttggtatgacagtttaaggcacacattattgacttggggatttcaaaacaccaagagtg 2313069  T
Q  536 attcatc 542  Q
    | |||||    
T  2313070 actcatc 2313076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 379
Target Start/End: Original strand, 25817122 - 25817457
Alignment:
Q  44 agtggaaagaagccatggatgcagaattcaaagctctaacaacaaatcaaacttggacactggtaccacttcaggggaaagaaaacatcatagactcgaa 143  Q
    |||||||  |||| |||||  |||||||||||||||||| | | || ||||| |||||||| ||||||  ||| ||  ||||   |||||| || || ||    
T  25817122 agtggaagcaagcaatggactcagaattcaaagctctaatatcgaaccaaacatggacactagtaccatatcaaggccaagatcgcatcattgattcaaa 25817221  T
Q  144 atgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttcaacaaaatgcaggtctagactat 243  Q
    |||||| || ||||| || |  |||||||||||||| ||||||||||| ||||||||||| ||||| | ||| | ||||||||  || |||||||| | |    
T  25817222 atgggtgttcaaaacaaaatttaaggcagatggctcaattgaaagaaggaaagcaagattagttgcaagaggatatcaacaaacagctggtctagatttt 25817321  T
Q  244 gatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaagttaggcaattagacataaata 343  Q
    || || || |||||||| ||  ||||  | || || || |||||| ||||  | || || ||| || | ||||||||  |||| ||||| |||||||| |    
T  25817322 gaagaaacctttagtcctgttgtcaaggcaagtacagtgagaattatccttgctattgctgtatatctcaattgggacattagacaattggacataaaca 25817421  T
Q  344 atgcattcttgaatggaaatctcaaagaaactgtat 379  Q
    |||| ||| | |||||| ||||||| ||||||||||    
T  25817422 atgcgttcctaaatggacatctcaaggaaactgtat 25817457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 29222063 - 29221925
Alignment:
Q  88 aatcaaacttggacactggtaccacttcaggggaaagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaa 187  Q
    ||||||||||||||| | ||||||  ||| |   ||||||||||||| ||||| || |||||||| || || |||||||| ||||||||||| |||||||    
T  29222063 aatcaaacttggacattagtaccatatcaagaccaagaaaacatcattgactccaagtgggttttcaagaccaagtacaaagcagatggctcgattgaaa 29221964  T
Q  188 gaagaaaagcaagattggttgccaaaggttttcaacaaa 226  Q
    |||||||||||||| ||||||| ||||| || |||||||    
T  29221963 gaagaaaagcaagactggttgcgaaaggattccaacaaa 29221925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 29335362 - 29335224
Alignment:
Q  88 aatcaaacttggacactggtaccacttcaggggaaagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaa 187  Q
    ||||||||||||||| | ||||||  ||| |   ||||||||||||| ||||| || |||||||| || || |||||||| ||||||||||| |||||||    
T  29335362 aatcaaacttggacattagtaccatatcaagaccaagaaaacatcattgactccaagtgggttttcaagaccaagtacaaagcagatggctcgattgaaa 29335263  T
Q  188 gaagaaaagcaagattggttgccaaaggttttcaacaaa 226  Q
    |||||||||||||| ||||||| ||||| || |||||||    
T  29335262 gaagaaaagcaagactggttgcgaaaggattccaacaaa 29335224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 122 - 398
Target Start/End: Original strand, 22993465 - 22993741
Alignment:
Q  122 aagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttca 221  Q
    ||||||||||  | ||||| |||||||| || || || || |||||| ||||||| ||||| ||||| || ||||| ||| | ||||| || || |||||    
T  22993465 aagaaaacatagttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttca 22993564  T
Q  222 acaaaatgcaggtctagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaa 321  Q
    |||||  || ||  | |||||||| || || |||||||| ||  ||||| | ||||| || ||| |  ||||  |||| ||||||||  | |||||||||    
T  22993565 acaaacagctggaatcgactatgaagaaacatttagtcctgtagtcaaagctagcacagtcagagtcatcctttccattgcagtacacctcaattgggaa 22993664  T
Q  322 gttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaagg 398  Q
    ||||||||| ||||||| || ||||| ||| | |||||| | ||||||||||| ||||| |||||||| || |||||    
T  22993665 gttaggcaactagacatcaacaatgcgttcctaaatggatacctcaaagaaaccgtattcatgcatcagccagaagg 22993741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 29458795 - 29458691
Alignment:
Q  122 aagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttca 221  Q
    |||||||||| || || ||||||||||| || ||||||||||||||||||||||| || || ||||||||||||||||| || || || | |||||||||    
T  29458795 aagaaaacataattgattcgaaatgggtgttcaaaactaagtacaaggcagatgggtcaatcgaaagaagaaaagcaaggttagtggcaagaggttttca 29458696  T
Q  222 acaaa 226  Q
    |||||    
T  29458695 acaaa 29458691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 398
Target Start/End: Complemental strand, 8321501 - 8321225
Alignment:
Q  122 aagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttca 221  Q
    ||||||||||  | ||||| |||||||| || || || || |||||| ||||||| ||||| ||||| || ||||| ||| | ||||| || || |||||    
T  8321501 aagaaaacatagttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttca 8321402  T
Q  222 acaaaatgcaggtctagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaa 321  Q
    |||||  || ||  | |||||||| || || |||||||| ||  |||||   ||||| || ||| |  ||||  | || ||||||||  | |||||||||    
T  8321401 acaaacagctggaatcgactatgaagaaacatttagtcctgtagtcaaagttagcacagtcagagtcatcctctcaattgcagtacacctcaattgggaa 8321302  T
Q  322 gttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaagg 398  Q
    ||||||||| ||||||| || ||||| ||| | |||||| | ||||||||||| ||||| |||||||| || |||||    
T  8321301 gttaggcaactagacatcaacaatgcgttcctaaatggatacctcaaagaaaccgtattcatgcatcagccagaagg 8321225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 437
Target Start/End: Complemental strand, 29458604 - 29458480
Alignment:
Q  313 aattgggaagttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaaggctatatagatccag 412  Q
    ||||||||  |||| ||||| |||||||||||||| ||| | |||||| | || || || ||||||||||||  |||||| ||||| ||| ||||||| |    
T  29458604 aattgggacattagacaattggacataaataatgctttcctaaatggacacctaaaggagactgtatttatgtttcaaccagaagggtatgtagatcctg 29458505  T
Q  413 ccaaatcttatcacatatgcaagtt 437  Q
    | ||| |  ||||||| ||||||||    
T  29458504 caaaaccaaatcacatttgcaagtt 29458480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 278
Target Start/End: Complemental strand, 18110284 - 18110132
Alignment:
Q  125 aaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttcaaca 224  Q
    |||||||||| ||||| || ||||| || ||||| |||||||||||||||||  |  | ||||| |||||||||| |||||||||||| |||||||||||    
T  18110284 aaaacatcattgactcaaagtgggtcttcaaaacaaagtacaaggcagatggaacattggaaaggagaaaagcaatattggttgccaagggttttcaaca 18110185  T
Q  225 aaatgcaggtctagactatgatgagacttttagtcccgtgatcaaatccagcac 278  Q
    | |||||||  |||| ||||| || ||||| ||||| || || ||| |||||||    
T  18110184 atatgcaggcatagattatga-gaaactttcagtccagtaattaaagccagcac 18110132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 389
Target Start/End: Complemental strand, 29737841 - 29737574
Alignment:
Q  122 aagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttca 221  Q
    ||||||||||  | ||||| |||||||| || || || || |||||| ||||||| ||||| ||||| || ||||| ||| | ||||| || || |||||    
T  29737841 aagaaaacatagttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttca 29737742  T
Q  222 acaaaatgcaggtctagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaa 321  Q
    |||||  || ||  | |||||||| || || |||||||| ||  ||||| | ||||| |  ||| |  ||||  | || ||||||||  | |||||||||    
T  29737741 acaaacagctggaatcgactatgaagaaacatttagtcctgtagtcaaagctagcacagccagagtcatcctctcaattgcagtacacctcaattgggaa 29737642  T
Q  322 gttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatca 389  Q
    ||||||||| ||||||| || ||||| ||| | |||||| | ||||||||||| ||||| ||||||||    
T  29737641 gttaggcaactagacatcaacaatgcgttcctaaatggatacctcaaagaaaccgtattcatgcatca 29737574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 398
Target Start/End: Original strand, 492407 - 492683
Alignment:
Q  122 aagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttca 221  Q
    ||||||||||  | ||||| |||||||| || || || || |||||| ||||||| ||||| ||||| || ||||| ||| | ||||| || || |||||    
T  492407 aagaaaacatagttgactcaaaatgggtcttcaagaccaaatacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttca 492506  T
Q  222 acaaaatgcaggtctagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaa 321  Q
    |||||  || ||  | |||||||| || || |||||||| ||  ||||| | ||||| || ||| |  ||||  | || ||||||||  | |||||||||    
T  492507 acaaacagctggaatcgactatgaagaaacatttagtcctgtagtcaaagctagcacagtcagagtcatcctctcaattgcagtacacctcaattgggaa 492606  T
Q  322 gttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaagg 398  Q
    ||||||||| ||||||| || ||||| ||| | |||||| | ||||||||||| ||||| |||||||| || |||||    
T  492607 gttaggcaactagacatcaacaatgcgttcctaaatggatacctcaaagaaaccgtattcatgcatcagcccgaagg 492683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 398
Target Start/End: Original strand, 28401400 - 28401676
Alignment:
Q  122 aagaaaacatcatagactcgaaatgggtttttaaaactaagtacaaggcagatggctccattgaaagaagaaaagcaagattggttgccaaaggttttca 221  Q
    ||||||||||  | ||||| ||||| || || || || || |||||| ||||||| ||||| ||||| || ||||| ||| | ||||| || || |||||    
T  28401400 aagaaaacatagttgactcaaaatgagtcttcaagaccaactacaagtcagatggttccatagaaaggaggaaagccagactagttgcaaaggggtttca 28401499  T
Q  222 acaaaatgcaggtctagactatgatgagacttttagtcccgtgatcaaatccagcactgtaagaattgtcctaaccatcgcagtacatttaaattgggaa 321  Q
    |||||  || ||  | |||||||| || || |||||||| ||  ||||| | ||||| || ||| |  ||||  | || ||||||||  | |||||||||    
T  28401500 acaaacagctggaatcgactatgaagaaacatttagtcctgtagtcaaagctagcacagtcagagtcatcctctcaattgcagtacacctcaattgggaa 28401599  T
Q  322 gttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaagg 398  Q
    ||||||||| ||||||| || ||||| ||| | |||||| | ||||||||||| ||||| |||||||| || |||||    
T  28401600 gttaggcaactagacatcaacaatgcgttcctaaatggatacctcaaagaaaccgtattcatgcatcagccagaagg 28401676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1235 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 434
Target Start/End: Original strand, 1073 - 1194
Alignment:
Q  313 aattgggaagttaggcaattagacataaataatgcattcttgaatggaaatctcaaagaaactgtatttatgcatcaaccggaaggctatatagatccag 412  Q
    |||||| ||||||||||| ||||||| || ||||| ||| | |||||| | ||||||||||| ||||| |||||||| || ||||| | | | |||||      
T  1073 aattggaaagttaggcaactagacatcaacaatgcgttcctaaatggatacctcaaagaaaccgtattcatgcatcagccagaaggatttgttgatccta 1172  T
Q  413 ccaaatcttatcacatatgcaa 434  Q
    ||||| || |||||||||||||    
T  1173 ccaaacctaatcacatatgcaa 1194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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