View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_112 (Length: 219)
Name: NF0857_low_112
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_112 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 46677118 - 46676951
Alignment:
| Q |
52 |
caattggtttgaatatgtatacttacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatatccttggcagcaaaaagtggacg |
151 |
Q |
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| T |
46677118 |
caattggtttgaatatgtatacgtacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatatccttggcagcaaaaagtggacg |
46677019 |
T |
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| Q |
152 |
ttgtttatcatttggagcacttaacatggcagttacaagaccacctgtgctagttcctgtaatcacat |
219 |
Q |
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| T |
46677018 |
ttgtttatcatttggagcacttaacatggcagttacaagaccacctgtgctagttcctgtaatcacat |
46676951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 46681077 - 46680933
Alignment:
| Q |
75 |
tacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatatccttggcagcaaaaagtggacgttgtttatcatttggagcactta |
174 |
Q |
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| T |
46681077 |
tacttttgttgtgggaagatctttggagaatgctccaagtaaaagggcttgatatccttggcagcaaaaagtgggcgctttttatcattcggagcgctta |
46680978 |
T |
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| Q |
175 |
acatggcagttacaagaccacctgtgctagttcctgtaatcacat |
219 |
Q |
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| T |
46680977 |
acatggcagttacaagaccacctgtgcttgttcctgtaatcacat |
46680933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 6090991 - 6091129
Alignment:
| Q |
81 |
tgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatatccttggcagcaaaaagtggacg-ttgtttatcatttggagcacttaacatg |
179 |
Q |
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| T |
6090991 |
tgttgtgggaaaattttagggcaatgttcaaggtaaaagggcttgatatctttggcagcaaaaagtggacgattgttt-ttatcaggagcagctagcatg |
6091089 |
T |
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| Q |
180 |
gcagttacaagaccacctgtgctagttcctgtaatcacat |
219 |
Q |
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| T |
6091090 |
gcagtcacaagacctcctgtacttgttcctgagatcacat |
6091129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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