View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_128 (Length: 217)
Name: NF0857_low_128
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_128 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 39890317 - 39890197
Alignment:
| Q |
42 |
tgtgtcgttttagaagaaaaacttaaagaaatagagagtatatgtgaccgccattaacattgaactatcatagaaaaggggttggattcaattggtttga |
141 |
Q |
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| T |
39890317 |
tgtgtcgttttaaaagcaaaacttcaagtaatagagagtatatgtgaccgccattaacattgaactatcatagaaaaggggttggattcaattggtttga |
39890218 |
T |
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| Q |
142 |
ccaaaggtaataaaagagttg |
162 |
Q |
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| T |
39890217 |
ccaaaggtaataaaagagttg |
39890197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 39890197 - 39890128
Alignment:
| Q |
119 |
ggggttggattcaattggtttgaccaaaggtaataaaagagttgataagttaaatgtttatattcaaatc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39890197 |
ggggttggattcaattggtttgaccaaaggtaataaaagagttgataagttaaatgtttatattcaaatc |
39890128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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