View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0857_low_16 (Length: 519)

Name: NF0857_low_16
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0857_low_16
NF0857_low_16
[»] chr5 (3 HSPs)
chr5 (22-322)||(18542281-18542571)
chr5 (367-519)||(18541535-18541683)
chr5 (371-416)||(28452596-28452641)
[»] chr1 (1 HSPs)
chr1 (378-412)||(32722234-32722268)
[»] chr6 (2 HSPs)
chr6 (378-420)||(32908382-32908424)
chr6 (388-420)||(27832653-27832685)
[»] chr4 (1 HSPs)
chr4 (353-413)||(43061677-43061737)
[»] chr2 (2 HSPs)
chr2 (371-416)||(16698737-16698782)
chr2 (380-416)||(26610433-26610469)
[»] chr8 (1 HSPs)
chr8 (378-414)||(43534943-43534979)
[»] chr3 (1 HSPs)
chr3 (386-418)||(53791952-53791984)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 18542571 - 18542281
Alignment:
Q  22 catcatcaatctttacatgctcaagaatttccatagggtctcttgactctcttctgttataattactgtgtgcttcctcctcatgatgagtacttctatt 121  Q
    ||||||||||||||||||||||||| ||||||||||||||||||         ||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  18542571 catcatcaatctttacatgctcaaggatttccatagggtctctt---------ctgttgtaattactatgtgcttcctcttcatgatgagtacttctatt 18542481  T
Q  122 gatttgttgaaccggatcaacttcagtgtccatcgtagagtctctcttctgatgattttgatcgaagttatcatcaccagacaaacgaattggctgcaat 221  Q
      |||||||||| |||||||||||| |||||| ||||| |||| ||| | ||||||||||||  | |||||| ||||| |||||||||||  ||||||||    
T  18542480 agtttgttgaacaggatcaacttcactgtccaccgtagggtctttctgccgatgattttgatacatgttatcttcacctgacaaacgaatctgctgcaat 18542381  T
Q  222 cctgcatattcaacctcagactttaagacaataacatttactttggcaactactagctatgaagcactgacacaaccatgagcaccggacacaactttga 321  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||  ||||| |||| ||||||||||||||||||||||||    
T  18542380 cctgcatattcaacctcagac-ttaagacaataaaatttactttggcaactacttgctatgaaaaactgatacaaacatgagcaccggacacaactttga 18542282  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 367 - 519
Target Start/End: Complemental strand, 18541683 - 18541535
Alignment:
Q  367 tataatttttcgaaaataaaataattgaatgtaactacatgtgtcggtgtcatgaatgtaactacgtgtaaaaacatattttgcatttacctggatcaag 466  Q
    |||| ||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||    ||||||||||||||||||||||||||||||||||||    
T  18541683 tatattttttcgtaaataaaataattgaatataactacgtgtgtcggtgtcataaatgta----cgtgtaaaaacatattttgcatttacctggatcaag 18541588  T
Q  467 gattttaacctttaccctcaatgcaactagagtctcaacttgtttactcaaaa 519  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18541587 gtttttaacctttacccttaatgcaactagagtctcaacttgtttactcaaaa 18541535  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 28452596 - 28452641
Alignment:
Q  371 atttttcgaaaataaaataattgaatgtaactacatgtgtcggtgt 416  Q
    |||||| ||||||||||||||||||||| || |||||||| |||||    
T  28452596 atttttagaaaataaaataattgaatgttaccacatgtgttggtgt 28452641  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 412
Target Start/End: Complemental strand, 32722268 - 32722234
Alignment:
Q  378 gaaaataaaataattgaatgtaactacatgtgtcg 412  Q
    |||||||||||||||||||||||||||||||||||    
T  32722268 gaaaataaaataattgaatgtaactacatgtgtcg 32722234  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 420
Target Start/End: Original strand, 32908382 - 32908424
Alignment:
Q  378 gaaaataaaataattgaatgtaactacatgtgtcggtgtcatg 420  Q
    ||||||| |||||||||||||||| || |||||||||||||||    
T  32908382 gaaaatagaataattgaatgtaaccacgtgtgtcggtgtcatg 32908424  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 27832653 - 27832685
Alignment:
Q  388 taattgaatgtaactacatgtgtcggtgtcatg 420  Q
    ||||||||||||||||||||| |||||||||||    
T  27832653 taattgaatgtaactacatgtatcggtgtcatg 27832685  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 43061737 - 43061677
Alignment:
Q  353 acatcgacactagttataatttttcgaaaata-aaataattgaatgtaactacatgtgtcgg 413  Q
    |||||||||||||| |||||||   ||||||| ||||||||||||||||| |||||||||||    
T  43061737 acatcgacactagtaataatttga-gaaaatataaataattgaatgtaacaacatgtgtcgg 43061677  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 16698782 - 16698737
Alignment:
Q  371 atttttcgaaaataaaataattgaatgtaactacatgtgtcggtgt 416  Q
    |||||| ||||||  ||||||||||||||||| |||||||||||||    
T  16698782 atttttagaaaatctaataattgaatgtaactgcatgtgtcggtgt 16698737  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 26610469 - 26610433
Alignment:
Q  380 aaataaaataattgaatgtaactacatgtgtcggtgt 416  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  26610469 aaataaaataattgagtgtaactacatgtgttggtgt 26610433  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 43534943 - 43534979
Alignment:
Q  378 gaaaataaaataattgaatgtaactacatgtgtcggt 414  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  43534943 gaaaatgaaatatttgaatgtaactacatgtgtcggt 43534979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 53791984 - 53791952
Alignment:
Q  386 aataattgaatgtaactacatgtgtcggtgtca 418  Q
    |||||||||||||||| ||||||||||||||||    
T  53791984 aataattgaatgtaaccacatgtgtcggtgtca 53791952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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