View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_17 (Length: 470)
Name: NF0857_low_17
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 161 - 470
Target Start/End: Complemental strand, 48693522 - 48693213
Alignment:
| Q |
161 |
agcataggaattaaaaacaggttccttcattttcatgttttagtaaatgattnnnnnnnnttactatataaacattatgaaaacagtcgtgcatcggaca |
260 |
Q |
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| T |
48693522 |
agcataggaattaaaaacaggttccttcattttcatgttttagtaaatgattaaaaaaaattactatataaacattatgaaaacactcgtgcaacggaca |
48693423 |
T |
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| Q |
261 |
agtatacacactagcctagttactctagtatattatgtctgaataacaattaactgaaaagatcacaatgaagttaagctaaccttatgaaagatagtgg |
360 |
Q |
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| T |
48693422 |
agtatacacactagtctagttactctagtatattatgtctgaataacaattaactgaaaagatcacaatgaagttaagctaaccttatgaaagatagtgg |
48693323 |
T |
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| Q |
361 |
agtcaaatgcattaagcagttaaaaaattattgagaaacactacttggactttttagcaggttcagttttcttttgtctgaatgaaatgaaaaacctcag |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48693322 |
agtcaaatgcattaagcagttaaaaaattattgagaaacattacttggactttttagcaggttcagttttcttttgtctgaatgaaatgaaaaacctcag |
48693223 |
T |
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| Q |
461 |
gtgttgttga |
470 |
Q |
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| T |
48693222 |
gtgttgttga |
48693213 |
T |
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