View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_18 (Length: 464)
Name: NF0857_low_18
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_18 |
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| [»] scaffold0684 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 9892232 - 9892038
Alignment:
| Q |
30 |
atatatagatcactacaacaattatgatgtaatacaacgccactgttatatgacttcaaaaaatctgtttcctaacatgacaaagacaacgaaattttaa |
129 |
Q |
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| T |
9892232 |
atatatagatcactacaacaattatgatgtaatacaacgccactgttatatgacttcaaaaaatctgtttcctaacatgacaaagacaacgaaattttaa |
9892133 |
T |
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| Q |
130 |
ttggtagtgttagttttcnnnnnnnngacacaattggtagacttagttgttttcaatattataagaataacgtttaaataacagttttatttcactg |
226 |
Q |
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| T |
9892132 |
ttggtagtgttagtttt--tttttttgacacaattggtagacttagttgttttcaatattataagaataacgtttaaataacagttttatttcactg |
9892038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 318 - 454
Target Start/End: Complemental strand, 9891946 - 9891810
Alignment:
| Q |
318 |
cagatatctctctcatcgaatcatttttctcagaagcgtcgctttatcccaattatgcttagtcaaaatcgcttaatcaaaatcgcttcatgacatcact |
417 |
Q |
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| T |
9891946 |
cagatatctctctcatcaaatcatttttctcagaagcgccgctttatcccaattacgcttagtcaaaatcgcttaatcaaaatcgcttcatgacatcatt |
9891847 |
T |
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| Q |
418 |
tcatcagtttcatttcaatcactctcacatcttcatc |
454 |
Q |
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| T |
9891846 |
tcatcagtttcatttcaatcactctcacatcttcatc |
9891810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 376 - 454
Target Start/End: Complemental strand, 3368239 - 3368161
Alignment:
| Q |
376 |
ttagtcaaaatcgcttaatcaaaatcgcttcatgacatcacttcatcagtttcatttcaatcactctcacatcttcatc |
454 |
Q |
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| T |
3368239 |
ttagtcaaaattgcttaatcaaaatctcttcatgacatctcctcatcagtttcatttcaatcactctcacatcttcatc |
3368161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 318 - 454
Target Start/End: Complemental strand, 54189201 - 54189068
Alignment:
| Q |
318 |
cagatatctctctcatcgaatcatttttctcagaagcgtcgctttatcccaattatgcttagtcaaaatcgcttaatcaaaatcgcttcatgacatcact |
417 |
Q |
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| T |
54189201 |
cagatatctctctcatagaatcacttttctcagaaggg---ctttatcccaaaatagctttgtcaaaattgcttaatcaaaatctcttcatgacatctcc |
54189105 |
T |
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| Q |
418 |
tcatcagtttcatttcaatcactctcacatcttcatc |
454 |
Q |
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| T |
54189104 |
tcatcagtttcatttcaatcactctcacatcttcatc |
54189068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 318 - 454
Target Start/End: Original strand, 8570012 - 8570145
Alignment:
| Q |
318 |
cagatatctctctcatcgaatcatttttctcagaagcgtcgctttatcccaattatgcttagtcaaaatcgcttaatcaaaatcgcttcatgacatcact |
417 |
Q |
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| T |
8570012 |
cagatatctctctcatagaatcacttttctcagaaggg---ctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcc |
8570108 |
T |
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| Q |
418 |
tcatcagtttcatttcaatcactctcacatcttcatc |
454 |
Q |
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| T |
8570109 |
tcatcagtttcatttcaatcacactcacatcttcatc |
8570145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 318 - 454
Target Start/End: Original strand, 28695972 - 28696105
Alignment:
| Q |
318 |
cagatatctctctcatcgaatcatttttctcagaagcgtcgctttatcccaattatgcttagtcaaaatcgcttaatcaaaatcgcttcatgacatcact |
417 |
Q |
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|||||||||||||||| |||||| |||||||||||| | ||||||||||| |||| |||||||| |||||||||||||| |||||||||||| | |
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| T |
28695972 |
cagatatctctctcatagaatcacttttctcagaaggg---ctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcc |
28696068 |
T |
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| Q |
418 |
tcatcagtttcatttcaatcactctcacatcttcatc |
454 |
Q |
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| T |
28696069 |
tcatcagtttcatttcaatcacactcacatcttcatc |
28696105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 6624 - 6657
Alignment:
| Q |
40 |
cactacaacaattatgatgtaatacaacgccact |
73 |
Q |
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| T |
6624 |
cactacaacaattatgatctaatacaacgccact |
6657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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