View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_20 (Length: 461)
Name: NF0857_low_20
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_20 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0247 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 33904173 - 33903784
Alignment:
| Q |
16 |
attggtagagaatatgttggtgtttcacaaccaagtcttggtaatgctccaataccatgtgcaatgtggtgggacggtttattgaacttggaggagcata |
115 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
33904173 |
attggtagagatattgttggtgtttcccaaccaagtcttggtagtgctccaataccgtgtgcaatgttgtgggacagtttattgaacttggaggagcata |
33904074 |
T |
|
| Q |
116 |
aaagtagtgagaaaattgggtcaggttctttattacaagaggagaactttatttctgagtttccaaatgtggatgactccttttgggatttcaacctttg |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904073 |
aaagtagtgagaaaattgggtcaggctctttattacaagaggagaacttcatttctgagtttccaaatgtggatgactccttttgggatttcaacctttg |
33903974 |
T |
|
| Q |
216 |
tgatttcgattctctttgagatctttatatattggttttggtgatatatttgccaataatatttcttaggaaaaatgtattttctatattatactatcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903973 |
tgatttcgattctctttgagatctttatatattggttttggtgatatatttgccaataatatttcttaggaaaaatgtattttctatattatactatcaa |
33903874 |
T |
|
| Q |
316 |
taatttatcagggtcttcttacaaggagagctatatggaataatttatctcatcaattcggttcatatctatcaaaagctatattgcatg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903873 |
taatttatcagggtcttcttacaaggagagctatatggaataatttatctcatcaattcggttcatatctatcaaaagctatattgcatg |
33903784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 33762405 - 33762284
Alignment:
| Q |
121 |
agtgagaaaattgggtcaggttctttattacaagaggagaactttatttctgagtttccaaatgtggatgactccttttgggatttcaacctttgtgatt |
220 |
Q |
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|||||||||||||| ||| | |||| ||||||||||||| |||||| | |||||| | | | ||| ||||||||||||||| |||||||||||||| |
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| T |
33762405 |
agtgagaaaattggctcatgctcttcattacaagaggagtactttagtatggagttttctaccattgattactccttttgggattccaacctttgtgatt |
33762306 |
T |
|
| Q |
221 |
tcgattctctttgagatcttta |
242 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
33762305 |
tcatttctctttgagatcttta |
33762284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 33821406 - 33821211
Alignment:
| Q |
39 |
ttcacaaccaagtcttggtaatgctccaataccatgtgcaatgtggtgggacggtttattgaacttggaggagcataaaagtagtgagaaaattgggtca |
138 |
Q |
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|||||||| |||||| ||||||| ||| ||||||||| |||||||| |||| |||||| |||||||| ||| || || | ||| |||||||| ||| |
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| T |
33821406 |
ttcacaacaaagtctaggtaatgttcccgtaccatgtggaatgtggtcggacagtttatggaacttgggggaacaagtaaacattgacaaaattggctca |
33821307 |
T |
|
| Q |
139 |
ggttctttattacaagaggagaac---tttatttctgagtttccaaatgtggatgactccttttgggatttcaacctttgtgatttcgattctctt |
231 |
Q |
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| |||| |||||||| |||||| |||| | ||| |||||||||| ||||||| ||||||||||||||||||| |||||| |||| |||| |
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| T |
33821306 |
tgctcttcgttacaagaagagaacaactttaatatggaggttccaaatgttgatgacttcttttgggatttcaaccttgatgattttgattttctt |
33821211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 33733929 - 33733728
Alignment:
| Q |
39 |
ttcacaaccaagtcttggtaatgctccaataccatgtgcaatgtggtgggacggtttattgaacttggaggagcataaaagtagtgagaaaattgggtca |
138 |
Q |
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||||||||||||| | | ||||| ||||||||| |||||| ||| || |||| ||||| | |||||| || || | | |||||| ||||||| ||| |
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| T |
33733929 |
ttcacaaccaagtatagataatgttccaataccgtgtgcattgtcgtcggacaatttatgggacttgggtgaacaagtaggcagtgagcaaattggctca |
33733830 |
T |
|
| Q |
139 |
ggttctttattacaagaggagaactttatttctgagtttccaaatgtggatgactccttttgggatttcaacctttgtgatttcgattctctttgagatc |
238 |
Q |
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|| |||| | |||||||| ||||||| | |||||| | |||| ||||||||| ||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
33733829 |
ggctcttcaatacaagag---aactttaatatggagtttttagatgttgatgactccctttggaattccaacctttgtgatttcgattctcttttggatc |
33733733 |
T |
|
| Q |
239 |
tttat |
243 |
Q |
| |
|
||||| |
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| T |
33733732 |
tttat |
33733728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 148558 - 148286
Alignment:
| Q |
16 |
attggtagagaatatgttggtgtttcacaaccaagtcttggtaatgctccaataccatgtgcaatgtggtgggacggtttattgaacttggaggagcata |
115 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
148558 |
attggtagagatattgttggtgtttcagaaccaagtcttggtaatgctccaataccgtgtgcaatgtggtgggacggtttattgaacttgca-------- |
148467 |
T |
|
| Q |
116 |
aaagtagtgagaaaattgggtcaggttctttattacaagaggagaactttatttctgagtttccaaatgtggatgactccttttgggatttcaacctttg |
215 |
Q |
| |
|
| || ||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
148466 |
-atgtggtgagaaaattggttcaggctcttcattacaagaggagaactttatt---gagtttccaaatgtggatgactccttttgggatttcaacctttg |
148371 |
T |
|
| Q |
216 |
tgatttcgattctctttgagatctttatatattggttttggtgatatatttgccaataatatttcttaggaaaaatgtattttct |
300 |
Q |
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||||| ||||||||||| ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
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| T |
148370 |
tgattacgattctcttttagatcattagatattggttttggtgtaatatttgccaatactattttttaggaaaaatgtattttct |
148286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 21305652 - 21305468
Alignment:
| Q |
55 |
ggtaatgctccaataccatgtgcaatgtggtgggacggtttattgaacttggaggagcataaaagtagtgagaaaattgggtcaggttctttattacaag |
154 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||| |||| | |||||||| || ||| | |||||||||||||||||| | |||| |||||||| |
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| T |
21305652 |
ggtaatgccccaataccatgtgaaatgtggtgtgacagtttgtggaacttgggagaacatgtagacagtgagaaaattgggtcatgctcttcattacaag |
21305553 |
T |
|
| Q |
155 |
aggagaactttatttctgagtttccaaatgtggatga---ctccttttgggatttcaacctttgtgatttcgattctctttgagatct |
239 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
21305552 |
aggagaacttaatg---gagtttccaaatgttgatgatgactccttttgggatttcaacctttgtgatttgaattctctttgggatct |
21305468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 22587 - 22642
Alignment:
| Q |
187 |
gatgactccttttgggatttcaacctttgtgatttcgattctctttgagatcttta |
242 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| || | |||| |||||||||| |
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|
| T |
22587 |
gatgactccttttgggatttcaacttttctgattttgaatttcttcgagatcttta |
22642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 5471668 - 5471715
Alignment:
| Q |
195 |
cttttgggatttcaacctttgtgatttcgattctctttgagatcttta |
242 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
5471668 |
cttttgggatttcaacatttgtgattatgattctctttgggatcttta |
5471715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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