View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_22 (Length: 457)
Name: NF0857_low_22
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 26436664 - 26436364
Alignment:
| Q |
11 |
cagagatgagagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttag |
110 |
Q |
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| T |
26436664 |
cagagatgagagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttcgtgccctcggaatcaacatgtttcg |
26436565 |
T |
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| Q |
111 |
ccaattctcccagaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaa |
210 |
Q |
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| T |
26436564 |
ccaattctcccggaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaa |
26436465 |
T |
|
| Q |
211 |
cacctaacagtgtatcgtgcccacgtcccttcatatcgaaaacccagattgacaaacatcaatgtggaggaaacaccaaaccaaatatacatttcatctc |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
26436464 |
cacctaacagtgcatcgtgcccacgtcccttcatatcgaaaacccagattgacaaacatcaatatggagtaaacaccaaaccaaatatacttttcatctc |
26436365 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
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| |
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| T |
26436364 |
t |
26436364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 26436325 - 26436247
Alignment:
| Q |
348 |
caatattcaaatagtacaaagatattgaatcttggttactctggcccaaacaaataaaacataaacttgcacaattata |
426 |
Q |
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| T |
26436325 |
caatattcaaatagtacaaagatattgaatcttggttactctggcccaaacaaataaaacataaacttgcacaattata |
26436247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 31633118 - 31633044
Alignment:
| Q |
353 |
ttcaaatagtacaaagatattgaatcttggttactctggcccaaacaaataaaacataaacttgcacaattatat |
427 |
Q |
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| T |
31633118 |
ttcaaatagtacaaagaggttgaatcttggttactctggtccaaacagataaaacataaactagcacaattatat |
31633044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 34662044 - 34662128
Alignment:
| Q |
50 |
atctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttagccaattctcccagaagaacaagcctaa |
137 |
Q |
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|||||||||||||||||||| | ||||||||||| ||||| || || |||| |||||||||||||| ||||||||||||||| |
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| T |
34662044 |
atctaagaacttgtaaacttcgtt---acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaa |
34662128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 45576670 - 45576596
Alignment:
| Q |
353 |
ttcaaatagtacaaagatattgaatcttggttactctggcccaaacaaataaaacataaacttgcacaattatat |
427 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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| T |
45576670 |
ttcaaatagtacaaagaggttgaatcttggttactctggtccaaacagataaaacataaactagcacaattatat |
45576596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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