View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_23 (Length: 438)
Name: NF0857_low_23
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 79 - 409
Target Start/End: Original strand, 41247251 - 41247580
Alignment:
| Q |
79 |
tgagatgaatggaataataaatgtagtatattacaaaacaattaa-ggcagataaaaatatatatgaattgtccacaccacttgatttcatatgcatgtt |
177 |
Q |
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| T |
41247251 |
tgagatgaatggaataataaatgtagtat--tacaaaacaattaaaggcagataaaaatatatatgaattgtccacaccacttgatttcatatgcatgtt |
41247348 |
T |
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| Q |
178 |
atgagaatatatgaaaaaagtttaaaaagtagccgatttgaaacaacctaagaacccgccgaagtttttaaatagcatgtcctacaataagatgaatgtg |
277 |
Q |
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| T |
41247349 |
atgagaatatacgaaaaaagtttaaaaagtagccgatttgaaacaacctaagaacccgccgaagtttttaaatagcatgtcctacaataagatgaatgtg |
41247448 |
T |
|
| Q |
278 |
ctgttaaactcatcacactattcaatatatactaccaaatattaaactaaaaacagtgacagcacgaaacattttgggcctaatatagtaattaaattca |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41247449 |
ctgttaaactcatcacactattcaatatatactaccaaatattaaactaaaaacagtgacagcacgaaacattttgggcctaatatagtaattaaattca |
41247548 |
T |
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| Q |
378 |
gagttgtttgttttggcatcatgtgaaattta |
409 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41247549 |
gagttgtttgttttggcatcatgtgaaattta |
41247580 |
T |
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