View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_24 (Length: 435)
Name: NF0857_low_24
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 26136520 - 26136131
Alignment:
| Q |
18 |
aattaaaagccgcatctcttttaattaggatattgaacctatataaagggtctttaattatgtgcttacaaagtgatattgtcctaaaccattgggcacc |
117 |
Q |
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| T |
26136520 |
aattaaaagccacatctcttttaattaggatattgaacctatataaagagtctttaattatgtgcttacaaagtgatattgtcctaaaccattgggcacc |
26136421 |
T |
|
| Q |
118 |
ctgatttgatttgacagagccaaactcgattnnnnnnnnnnnnnnnntcatcaaagtggtatctagaaatagtaaattttttaatactatacaagagatc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26136420 |
ctgatttgatttgacagagccaaactcgataaaaaaattaaaaaatatcatcaaagtggtatctagaaatagtaaattttttaatactatacaagagatc |
26136321 |
T |
|
| Q |
218 |
tataacttctaagttaatggttagtannnnnnncaaatggttaggtttgtgaaagggaaatccactaattggtgaatcttataaatggttgaaagaggag |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26136320 |
tataacttctaagttaatggttagtatttttttcaaatggttaggtttgtgaaagggaaatccactaattggtgaatcttataaatggttgaaagaggag |
26136221 |
T |
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| Q |
318 |
ttggaatccactaaaagaagtcacaaggattcttaatgggggtaccaaattatataacatgcttctt-ttttcaaagcctttggaaccct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26136220 |
ttggaatccactaaaagaagtcacaaggattcttaatgggggcaccaaattatataacatgcttctttttttcaaagcctttggaaccct |
26136131 |
T |
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