View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0857_low_27 (Length: 427)
Name: NF0857_low_27
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 32 - 359
Target Start/End: Complemental strand, 38224766 - 38224432
Alignment:
| Q |
32 |
aggggaaaactcgtgaagaagaagatcaatatcagaagaagctctaagctttgccatgaagtatg-------atttttctctctaagagtgtgagaaacc |
124 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
38224766 |
aggggaaaactcgtgaagaggaagatcaatatcagaagaagctctaagctttgccattaagtctgcacactgatttttctctctaagagtgtgagaaacc |
38224667 |
T |
|
| Q |
125 |
gttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggaccatttataagattaacgcaaacaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38224666 |
gttacgctggtatggtgaagcaattgctttatgtctttgatgagaacaacatagatgtgataacactcaatggggccatttataagattaacgcaaacaa |
38224567 |
T |
|
| Q |
225 |
gataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagataatagaaagctcagtcaacaagatgtcaaatga |
324 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38224566 |
gataatcagagtagcaaacaagctttgtataacccaaatccttctccatgatcagattgtgatagataatagaaagctcagtcaacaagatgtcaaatga |
38224467 |
T |
|
| Q |
325 |
tcctgaaatgaaaccagagaaacccacaatgaata |
359 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38224466 |
tcctggaatgaaaccagagaaacccgcaatgaata |
38224432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 122 - 359
Target Start/End: Complemental strand, 38945861 - 38945624
Alignment:
| Q |
122 |
accgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggaccatttataagattaacgcaaa |
221 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || || |||||| || ||||||||||||||| ||||| |
|
|
| T |
38945861 |
accgttacgttgttatggtgaagcaattgctttatgtcttggatgaaaacaacatagatatggtacgtctcaatcgggtcatttataagattaatgcaaa |
38945762 |
T |
|
| Q |
222 |
caagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagataatagaaagctcagtcaacaagatgtcaaa |
321 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| ||| ||||||||| | ||||||||||||||| |
|
|
| T |
38945761 |
caagagaatccgagtagcaaacaagctatgtataacccaaatccttcgccatgatcagaccgtgataaatagcagaaagctcggccaacaagatgtcaaa |
38945662 |
T |
|
| Q |
322 |
tgatcctgaaatgaaaccagagaaacccacaatgaata |
359 |
Q |
| |
|
|||||||| ||||||| ||||||||| | ||||||||| |
|
|
| T |
38945661 |
tgatcctggaatgaaatcagagaaactcgcaatgaata |
38945624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 10470105 - 10470281
Alignment:
| Q |
103 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggacca |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||||| ||| ||||| |||||||||||||| |||||||| || || | | | ||||||||| |
|
|
| T |
10470105 |
ctctctaagagtgtgagaaaccgttggattggtttgttgaagcatttgttttatctcttggatgagaaccacatagatatggtatctcacgatgggacca |
10470204 |
T |
|
| Q |
203 |
tttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcag |
279 |
Q |
| |
|
|| ||||| || |||||| ||||| ||| ||| |||||| |||| |||| |||||||||||| || |||||||||| |
|
|
| T |
10470205 |
ttaataaggttgacgcaagcaagagaatcagaatagcaagcaagttttgcataactcaaatctttagccatgatcag |
10470281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 38224391 - 38224332
Alignment:
| Q |
356 |
aataggagtgtcatggtaactaccatccacattaagaatagcacccgaaatattaatatt |
415 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38224391 |
aataggagtgtcatgctaactaccatccacattaagaatagcacccgaaatattattatt |
38224332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 292
Target Start/End: Original strand, 5203964 - 5204153
Alignment:
| Q |
103 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggacca |
202 |
Q |
| |
|
||||||||||||||||||||||||||| || | || ||||||| ||| ||||||||||| |||| |||| ||||||| || | | ||||||||| ||| |
|
|
| T |
5203964 |
ctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttgttttatgtcttgtatgataacagcatagatatggaacctctcaatggggcca |
5204063 |
T |
|
| Q |
203 |
tttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagata |
292 |
Q |
| |
|
| |||||| || | |||| ||||| ||| ||| |||||| ||| | || ||| | ||||||||| |||||||||| |||||||||| |
|
|
| T |
5204064 |
tatataaggttgatgcaagcaagagaatcagaatagcaagaaagttctgcatatcccaaatcctttgccatgatcagcccgtgatagata |
5204153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 38945582 - 38945523
Alignment:
| Q |
356 |
aataggagtgtcatggtaactaccatccacattaagaatagcacccgaaatattaatatt |
415 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
38945582 |
aatatgagtgtcatggcaactaccatccacattaagaatagcacctgaaatattattatt |
38945523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 10484032 - 10484138
Alignment:
| Q |
104 |
tctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggaccat |
203 |
Q |
| |
|
||||||||||||||||||| ||| | || | || ||||||| | | ||||| |||||||||||||||||| |||| || || | |||||||||||||| |
|
|
| T |
10484032 |
tctctaagagtgtgagaaattgttgcattgatttgttgaagcattggttttatctcttggatgagaacaacagagatatggtatctctcaatgggaccat |
10484131 |
T |
|
| Q |
204 |
ttataag |
210 |
Q |
| |
|
| ||||| |
|
|
| T |
10484132 |
taataag |
10484138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 46762948 - 46762898
Alignment:
| Q |
33 |
ggggaaaactcgtgaagaagaagatcaatatcagaagaagctctaagcttt |
83 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
46762948 |
ggggaaaaatcatgaagaagaagctcaatatcagaagcagctctaagcttt |
46762898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 51302999 - 51303068
Alignment:
| Q |
108 |
taagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacata |
177 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||| ||| ||||||||||| |||| ||||||||| |
|
|
| T |
51302999 |
taagagtgtgagaaaccgttacattgagttgatgaagcatttgttttatgtcttgtatgataacaacata |
51303068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 95 - 359
Target Start/End: Original strand, 1928859 - 1929123
Alignment:
| Q |
95 |
tgatttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaa |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| || ||||||||| ||||| |||||||| |||||||||||||||||||||| | || | ||||| |
|
|
| T |
1928859 |
tgatttctctctctaagagtgtgagaaatcgttacgttgttatggtgaaacaattactttatgttttggatgagaacaacatagatgaggtacctctcaa |
1928958 |
T |
|
| Q |
195 |
tgggaccatttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagataat |
294 |
Q |
| |
|
| || ||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1928959 |
tagggtcatttataagattaatgcaaacaagagaatcagagtagcaaacaagctctgtataactcaaatccttctccatgatcagaccatgatagatagc |
1929058 |
T |
|
| Q |
295 |
agaaagctcagtcaacaagatgtcaaatgatcctgaaatgaaaccagagaaacccacaatgaata |
359 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
1929059 |
agaaagctcggccaacaagatgtcaaatgatcctagaatgaaatcagagatacccacaatgaata |
1929123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 264
Target Start/End: Original strand, 35060931 - 35061093
Alignment:
| Q |
102 |
tctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggacc |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| || ||||||| ||| |||||||||||||||||||||| ||||| || || | ||||||||||| |
|
|
| T |
35060931 |
tctctctaagagtgtgagaaactgttacattggtttgttgaagcatttgttttatgtcttggatgagaacaatgtagatatggtacctttcaatgggacc |
35061030 |
T |
|
| Q |
202 |
atttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatc |
264 |
Q |
| |
|
||| ||||| || | |||| ||||| ||| ||| |||||| |||| | || ||||| |||||| |
|
|
| T |
35061031 |
attaataaggttgatgcaagcaagagaatcagaatagcaagcaagttatgcataacccaaatc |
35061093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 29339792 - 29339730
Alignment:
| Q |
103 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggat |
165 |
Q |
| |
|
||||||||||| |||||||||||| || || | ||||| |||||||| |||||||||||||| |
|
|
| T |
29339792 |
ctctctaagagcgtgagaaaccgtcacattgatttggtggagcaattgttttatgtcttggat |
29339730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2472 times since January 2019
Visitors: 6164