View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_31 (Length: 390)
Name: NF0857_low_31
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 53 - 381
Target Start/End: Original strand, 32424554 - 32424882
Alignment:
| Q |
53 |
atgtttatttgaacacttaaaaagttatggtgaatgacatgtttattgtgttttatggagaatcaatgagttgtgacagtttttgttatatttatgaact |
152 |
Q |
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| T |
32424554 |
atgtttatttgaacacttaaaaagttatggtgaatgacatgtttattgtgttttatggagaatcaatgagttgtgacagtttttgttatatttatgaact |
32424653 |
T |
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| Q |
153 |
atatactaaatttgattaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcacatgaacaacagagtctcgggcag |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32424654 |
atatactaaatttgattaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcacatgaacaacagagtcccgggcag |
32424753 |
T |
|
| Q |
253 |
ccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacgttgaaccctctagctgaattatt |
352 |
Q |
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| T |
32424754 |
ccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacgttgaatcctctagctgaattatt |
32424853 |
T |
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| Q |
353 |
gttagctgctgctgttttttctcctatga |
381 |
Q |
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| T |
32424854 |
gttagcagctgctgttttttctcctatga |
32424882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 218 - 381
Target Start/End: Original strand, 32450766 - 32450929
Alignment:
| Q |
218 |
aacataactcacatgaacaacagagtctcgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatg |
317 |
Q |
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| T |
32450766 |
aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatg |
32450865 |
T |
|
| Q |
318 |
tcatcaatcacgttgaaccctctagctgaattattgttagctgctgctgttttttctcctatga |
381 |
Q |
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| T |
32450866 |
tcatcaatcacgttgaatcctctagctgaattattgttagctgctgctgttttctctcctatga |
32450929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 32424554 - 32424600
Alignment:
| Q |
15 |
atgtttatttgaacacttaaaaagttatggtgaatgacatgtttatt |
61 |
Q |
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| T |
32424554 |
atgtttatttgaacacttaaaaagttatggtgaatgacatgtttatt |
32424600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 42678502 - 42678563
Alignment:
| Q |
167 |
attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactca |
228 |
Q |
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| T |
42678502 |
attaactatctgatttgtttttgaaatttgatgtcaaaattgtgtcaaaataacataactca |
42678563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 6986780 - 6986829
Alignment:
| Q |
167 |
attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaa |
216 |
Q |
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|||||||||||||||| |||| ||| |||| |||| |||||||||||||| |
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| T |
6986780 |
attaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaa |
6986829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 35226332 - 35226381
Alignment:
| Q |
138 |
ttatatttatgaactatatactaaatttgattaaccatctaaattgtttt |
187 |
Q |
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|||||||||| |||||| ||| || |||||||||||||||||||||||| |
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| T |
35226332 |
ttatatttattaactatcaactgaacttgattaaccatctaaattgtttt |
35226381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 12117162 - 12117202
Alignment:
| Q |
167 |
attaaccatctaaattgtttttgaattttgatgtcaaattt |
207 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||| |
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| T |
12117162 |
attaaccatataaattgttgttgaagtttgatgtcaaattt |
12117202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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