View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_33 (Length: 383)
Name: NF0857_low_33
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 36941657 - 36941946
Alignment:
| Q |
46 |
aaaatatgttatcaaagaatgagactcttgcaattctcaccttaaatgttgtctcatcaaatcataaaactaatttttctt--gtcaaattctaatcaca |
143 |
Q |
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| T |
36941657 |
aaaatatgttattaaagaatgacactcttgcaattcccaccttaaatgttgtctcatcaaatcataaaactaattttttttttgtcaaattctaaccaca |
36941756 |
T |
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| Q |
144 |
tattaattcatttgcaaacagtacttcatccttgcagtttagttcacctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgtt |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36941757 |
tattaattcatttgcaaacagtacttcatccttggagttaagttcacctgaatgtctatgaccgttgaccataaaatggatagaaagttacctcattgtt |
36941856 |
T |
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| Q |
244 |
tcacc-aactaacatctagaatgttgaattctgcattttgaaaatctccaatatgtatgtatctaacaacctttactcacaaatcaaaca |
332 |
Q |
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| T |
36941857 |
tcaccaaactaacatctagaatgttgaattctgcattttgaaaatctccaattaatatgtatctaacaacctttactcacaaatcaaaca |
36941946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 85 - 371
Target Start/End: Original strand, 36944845 - 36945121
Alignment:
| Q |
85 |
ccttaaatgttgtctcatcaaatcataaaactaatttttcttgtcaaattctaatcacatattaattcatttgcaaacagtacttcatccttgcagttta |
184 |
Q |
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| T |
36944845 |
ccttaaatgttgtctcatcaaatcataaaactaatttttcttgtcaaattccaaccacat------tcatttgcaaacagtacttcatccttgcagttaa |
36944938 |
T |
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| Q |
185 |
gttcacctgaatgtctatgaccgttgaccataaaatggataggaagttacctcattgtttcaccaactaacatctagaatgttgaattctgcattttgaa |
284 |
Q |
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| T |
36944939 |
gttcacctgaatgtctatgactgttgaccataaaatggacagaaagttacctcattgtttcaccaactaacatctagcatgttgaattctatattttgaa |
36945038 |
T |
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| Q |
285 |
aatctccaatatgtatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
371 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36945039 |
aatctccaa----tatgtatctaacaacctttactcacaaatcaaacacacacactacaagtgactcacctacctacctttcatatt |
36945121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 36944792 - 36944824
Alignment:
| Q |
46 |
aaaatatgttatcaaagaatgagactcttgcaa |
78 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
36944792 |
aaaatatgttatcaaagaatgacactcttgcaa |
36944824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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