View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0857_low_37 (Length: 365)

Name: NF0857_low_37
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0857_low_37
NF0857_low_37
[»] chr7 (13 HSPs)
chr7 (29-286)||(8437652-8437909)
chr7 (278-350)||(8437232-8437304)
chr7 (111-350)||(8414030-8414267)
chr7 (111-201)||(8408850-8408940)
chr7 (111-349)||(8428247-8428482)
chr7 (242-349)||(8450955-8451061)
chr7 (116-207)||(7916039-7916130)
chr7 (274-350)||(8408699-8408774)
chr7 (247-343)||(8481079-8481175)
chr7 (111-201)||(8451103-8451197)
chr7 (289-341)||(8447955-8448007)
chr7 (247-297)||(8349982-8350032)
chr7 (133-193)||(8377035-8377095)
[»] scaffold0060 (1 HSPs)
scaffold0060 (29-199)||(73058-73228)
[»] chr2 (1 HSPs)
chr2 (149-194)||(35978397-35978442)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 286
Target Start/End: Complemental strand, 8437909 - 8437652
Alignment:
Q  29 actgtaatccattgaatgattataatttagtaagttactctccatctagctcacagtggttatattttcttaattagtttcaaattcttattataaaatg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  8437909 actgtaatccattgaatgattataatttagtaagttactctccatctagcttacggtggttacattttcttaattagtttcaaattcttattataaaatg 8437810  T
Q  129 aaagaaatccaatatcagtattgtctcattaaacattgaattgagacatgatatgatataattatcttattatggcgaccaaatgctccatnnnnnnntt 228  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||       ||    
T  8437809 aaagaaatccaatatcggtattgtctcattaaacattgaattgagacatgatatgatacaattatcttattatggcgaccaaatacttcataaaaaaatt 8437710  T
Q  229 tataacgcagttgatggtcatgataggatatagagctggataaaaatgataaataaaa 286  Q
    || ||||  ||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  8437709 tagaacgtggttgatgatcatgataggatatagagcaagataaaaatgataaataaaa 8437652  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 8437304 - 8437232
Alignment:
Q  278 taaataaaatcatatcatatgtttgatactcacatgataaccaaccaaataacattattttgttcttttatat 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437304 taaataaaatcatatcatatgtttgatactcacatgataaccaaccaaataacattattttgttcttttatat 8437232  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 350
Target Start/End: Complemental strand, 8414267 - 8414030
Alignment:
Q  111 aattcttattataaaatgaaagaaatccaatatcagtattgtctcattaaacattgaattgagacatgatatgatataattatcttattatggcgaccaa 210  Q
    |||| |||||||||||||||||||||  |||||  ||||| |||||| ||| ||| ||||||||||| |||||||||||||||||||||||| ||| | |    
T  8414267 aattattattataaaatgaaagaaatttaatattggtattatctcatcaaatattaaattgagacataatatgatataattatcttattatgacgatcga 8414168  T
Q  211 atgctccatnnnnnnntttataacgcagttgatggtcatgataggatatagagctggataaaaatgataaataaaatcatatcatatgtttgatactcac 310  Q
    |||  ||||       |||| |||   |||||| ||||||| ||||||| || |  ||||||||  |||||| ||||||||||||||| |  || |||||    
T  8414167 atggaccataattttttttaaaacctggttgatagtcatgaaaggatattgaacaagataaaaa-cataaatcaaatcatatcatatg-tgaatgctcac 8414070  T
Q  311 atgataaccaaccaaataacattattttgttcttttatat 350  Q
    ||||||| ||| ||||||||||||||||||||| ||||||    
T  8414069 atgataatcaatcaaataacattattttgttctattatat 8414030  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 8408940 - 8408850
Alignment:
Q  111 aattcttattataaaatgaaagaaatccaatatcagtattgtctcattaaacattgaattgagacatgatatgatataattatcttattat 201  Q
    |||| |||||||||||| |||||||  ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  8408940 aattattattataaaataaaagaaactcaatatctgtattgtctcatcaaacattgaattgagacatgatatgatacaattatgttattat 8408850  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 349
Target Start/End: Original strand, 8428247 - 8428482
Alignment:
Q  111 aattcttattataaaatgaaagaaatccaatatcagtattgtctcattaaacattgaattgagacatgatatgatataattatcttattatggcgaccaa 210  Q
    |||| ||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||| |||| |||||||| | |||  |||| |||| |||| |    
T  8428247 aattattattataaaatgaaagaaactcaatatcaatattgtctcatcaaacattgaattgaaacataatatgatacatttagattatcatggtgaccta 8428346  T
Q  211 atgctccatnnnnnnntttataacgcagttgatggtcatgataggatatagagctggataaaaatgataaataaaatcatatcatatgtttgatactcac 310  Q
    ||   ||         |||| ||     || |||||||| ||| ||||| |||| |||||||||| ||||||| ||||||||||||||||| || |||||    
T  8428347 attgacc--taaaaaatttagaatatgtttcatggtcataataagatattgagccggataaaaataataaatacaatcatatcatatgtttaatgctcac 8428444  T
Q  311 atgataaccaaccaaataacattattttgttcttttata 349  Q
    |||| || ||||||||||||||||| ||||||| |||||    
T  8428445 atgacaa-caaccaaataacattatgttgttctattata 8428482  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 349
Target Start/End: Complemental strand, 8451061 - 8450955
Alignment:
Q  242 atggtcatgataggatatagagctggataaaaatgataaataaaatcatatcatatgtttgatactcacatgataaccaaccaaataacattattttgtt 341  Q
    |||||||| ||| ||||| |||| |||||||||| ||||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||| |||||    
T  8451061 atggtcataataagatattgagccggataaaaataataaatacaatcatatcatatgtttaatgctcacatgacaa-caaccaaataacattatgttgtt 8450963  T
Q  342 cttttata 349  Q
    || |||||    
T  8450962 ctattata 8450955  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 7916039 - 7916130
Alignment:
Q  116 ttattataaaatgaaagaaatccaatatcagtattgtctcattaaacattgaattgagacatgatatgatataattatcttattatggcgac 207  Q
    |||||||||||| |||||||  ||||||||| ||| |||||| ||||||||||||||||||| |||||||| || |||||||| ||| ||||    
T  7916039 ttattataaaataaaagaaactcaatatcagcattatctcatcaaacattgaattgagacataatatgatacaaatatcttatcatgacgac 7916130  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 8408774 - 8408699
Alignment:
Q  274 atgataaataaaatcatatcatatgtttgatactcacatgataaccaaccaaataacattattttgttcttttatat 350  Q
    |||||||||| ||||||||||| |||||||| ||||| | |||||||||||||||| ||||||||||||| ||||||    
T  8408774 atgataaatacaatcatatcat-tgtttgatgctcacgtaataaccaaccaaataatattattttgttctattatat 8408699  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 8481079 - 8481175
Alignment:
Q  247 catgataggatatagagctggataaaaatgataaataaaatcatatcatatgtttgatactcacatgataaccaaccaaataacattattttgttct 343  Q
    ||||||| ||||| |||| |||| ||||||||||||| ||| ||||||| ||||||||  |||||| || |||||||||||||||| || |||||||    
T  8481079 catgataagatattgagccggattaaaatgataaatacaattatatcatgtgtttgatgttcacataattaccaaccaaataacatcatgttgttct 8481175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 8451197 - 8451103
Alignment:
Q  111 aattcttattataaaatgaaagaaatccaatatcagtat----tgtctcattaaacattgaattgagacatgatatgatataattatcttattat 201  Q
    |||| ||||||||||||||||||||  ||||||||||||    |||||||| |||||||||||| | |||| |||||||||| |||  |||||||    
T  8451197 aattattattataaaatgaaagaaactcaatatcagtatatattgtctcatcaaacattgaattcaaacataatatgatatatttagattattat 8451103  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 8448007 - 8447955
Alignment:
Q  289 atatcatatgtttgatactcacatgataaccaaccaaataacattattttgtt 341  Q
    ||||||| ||||| || ||||||||||||||||||||| |||||| |||||||    
T  8448007 atatcatgtgtttaatgctcacatgataaccaaccaaacaacattgttttgtt 8447955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 8350032 - 8349982
Alignment:
Q  247 catgataggatatagagctggataaaaatgataaataaaatcatatcatat 297  Q
    ||||||| ||||| |||| |||| ||||||||||||| |||||||||||||    
T  8350032 catgataagatattgagccggattaaaatgataaatacaatcatatcatat 8349982  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 8377095 - 8377035
Alignment:
Q  133 aaatccaatatcagtattgtctcattaaacattgaattgagacatgatatgatataattat 193  Q
    |||| ||||||| ||||| |||| ||||||||||| | ||||||| |||||||| ||||||    
T  8377095 aaattcaatatcggtattttctcgttaaacattgagtcgagacataatatgatacaattat 8377035  T

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Target: scaffold0060 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 73058 - 73228
Alignment:
Q  29 actgtaatccattgaatgattataatttagtaagttactctccatctagctcacagtggttatattttcttaattagtttcaaattcttattataaaatg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  73058 actgtaatccattgaatgattataatttagtaagttactctccatctagctcacagtggttacattttcttaattactttcaaattcttattataaaatg 73157  T
Q  129 aaagaaatccaatatcagtattgtctcattaaacattgaattgagacatgatatgatataattatcttatt 199  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  73158 aaagaaattcaatatcagtattttctcattaaatattgaattgagacatgatatgatacaattatcttatt 73228  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 35978397 - 35978442
Alignment:
Q  149 ttgtctcattaaacattgaattgagacatgatatgatataattatc 194  Q
    |||||||||  |||| |||||||||||||||||||||| |||||||    
T  35978397 ttgtctcatcgaacaatgaattgagacatgatatgatacaattatc 35978442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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