View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0857_low_45 (Length: 342)
Name: NF0857_low_45
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_45 |
 | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
| [»] scaffold1689 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold1460 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 8724031 - 8723697
Alignment:
| Q |
1 |
cttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttaccctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724031 |
cttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttaccctt |
8723932 |
T |
|
| Q |
101 |
gttgggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8723931 |
gttgggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcagtctccagatgccactccaataaccaggctttcgcagat |
8723832 |
T |
|
| Q |
201 |
gatcattattaattatttcttcaatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatcaacctatccatgagaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8723831 |
gatcattattaattatttcttcaatgcacatacggtaagcacttttaacagaataacacccatccttctccgctttccaaatcaacctatccacgagaac |
8723732 |
T |
|
| Q |
301 |
ttgttggtgcaatggggtattcaagatattgttgg |
335 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| |
|
|
| T |
8723731 |
ttgttggtgcaaaggggtattcaagatattattgg |
8723697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13066189 - 13066306
Alignment:
| Q |
1 |
cttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaacttta-ccct |
99 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13066189 |
cttacagtgaaacaaaatatgataattgtcttcatggg-atcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccct |
13066287 |
T |
|
| Q |
100 |
tgttgggaaacaatctcta |
118 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13066288 |
tgttgggaaacaatctcta |
13066306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 20586958 - 20586690
Alignment:
| Q |
16 |
gatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatct |
115 |
Q |
| |
|
||||||||| || |||||||| || || |||||| | ||||||| || | ||||| ||||| |||||||| | ||| || || ||||| ||||| ||| |
|
|
| T |
20586958 |
gatatgatagctatcttcatgtgggtcgtcacacctgacacaatcagagagacaattgacacccctgcttcgcagcttcactctagttggaaaacagtct |
20586859 |
T |
|
| Q |
116 |
ctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaatta |
215 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| || || ||||||||||| || || | |
|
|
| T |
20586858 |
ctacaaattctccatatcaaattcttgactttaggaggcactttcaatctccagataccactccaatatccaggtttgcgaagatgatcattgttgatga |
20586759 |
T |
|
| Q |
216 |
tttcttcaatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatca |
284 |
Q |
| |
|
| |||||||| || || || |||| |||||| |||||||| ||||| |||||| |||||||| |||| |
|
|
| T |
20586758 |
tatcttcaatacatattcgataagcacttttgacagaatagttcccattcttctctgctttccatatca |
20586690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 42764593 - 42764490
Alignment:
| Q |
20 |
tgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctac |
119 |
Q |
| |
|
|||||||| ||||||||||| ||||| || | ||||| | |||||||||||||||||| |||||| ||| ||| || ||| |||||||||||||||| |
|
|
| T |
42764593 |
tgataactatcttcatgggggtcttcgcatctgacacactctgaagggcaattaacacccctgctttgtagcttcttccgtgtcgggaaacaatctctac |
42764494 |
T |
|
| Q |
120 |
aaat |
123 |
Q |
| |
|
|||| |
|
|
| T |
42764493 |
aaat |
42764490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 15789364 - 15789030
Alignment:
| Q |
1 |
cttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttaccctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15789364 |
cttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctcttcttcgtaactttaccctt |
15789265 |
T |
|
| Q |
101 |
gttgggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
15789264 |
gttgggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcagtctccagatgccactccaataaccaggctttcgcaaat |
15789165 |
T |
|
| Q |
201 |
gatcattattaattatttcttcaatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatcaacctatccatgagaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15789164 |
gatcattattaattatttcttcaatgcacatacggtaagcacttttaacagaataacacccatccttctctgctttccaaatcaacctatccacgagaac |
15789065 |
T |
|
| Q |
301 |
ttgttggtgcaatggggtattcaagatattgttgg |
335 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| |
|
|
| T |
15789064 |
ttgttggtgcaaaggggtattcaagatattattgg |
15789030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 8969135 - 8969403
Alignment:
| Q |
16 |
gatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatct |
115 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||| | ||||||| || || ||||| ||||| || || || ||||| || |||||||| ||||||||| |
|
|
| T |
8969135 |
gatatgatagctgtcttcatgcggatcaacacacctgacacaatcagatggacaattgacacccctactacgcaacttcactcttgttggcaaacaatct |
8969234 |
T |
|
| Q |
116 |
ctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaatta |
215 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||| || |||||||||| ||| ||||||||||||| ||||| || |||||||||||||| ||||| | |
|
|
| T |
8969235 |
ctacaaattctccatatcagattcttaactttaggaggcactttcaatcgccaaatgccactccaatgtccaggtttgcgcagatgatcattgttaataa |
8969334 |
T |
|
| Q |
216 |
tttcttcaatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatca |
284 |
Q |
| |
|
| ||||||| ||| ||||| |||| ||| ||||||||||| |||| | |||||| || ||||| |||| |
|
|
| T |
8969335 |
tatcttcaaggcagatacgataagcactcttaacagaatagtacccgttcttctctgccttccatatca |
8969403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 14504958 - 14505058
Alignment:
| Q |
107 |
aaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcat |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| || |||||||||| ||||||||||||||||||||| || || || |||| |||||||| |
|
|
| T |
14504958 |
aaacaatctctacaaattctccataccaaattcttgactttggggggaactttcagtctccagatgccactccaataccctggtttgcgcaaatgatcat |
14505057 |
T |
|
| Q |
207 |
t |
207 |
Q |
| |
|
| |
|
|
| T |
14505058 |
t |
14505058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 34934446 - 34934251
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| || || ||||| ||||| || |||| ||||| ||| |||| || | |||||||||||||||| |
|
|
| T |
34934446 |
tcttcatgggggtcttcacacctaacacaatccgacggacaattgacacccctaattcgcaacttcaccattgtcggaag----tctctacaaattctcc |
34934351 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttcaatgca |
228 |
Q |
| |
|
| || ||||||||||| || || || |||||||||||| |||||||||||||||| || || || |||||||||||||| || || | |||||||||||| |
|
|
| T |
34934350 |
atactaaattcttaaccttggggggcactttcaatctctagatgccactccaatacccgggtttacgcagatgatcattgtttatgacttcttcaatgca |
34934251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 2438807 - 2438540
Alignment:
| Q |
17 |
atatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctc |
116 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||||| || || ||||||||||| || |||| ||||| ||||| ||||| ||||| |||| |
|
|
| T |
2438807 |
atatggtaactatcttcatgggggtcttcacatctaacacagcccgacggacaattaacacccctacttctcaacttcaccctggttggaaaacagtctc |
2438708 |
T |
|
| Q |
117 |
tacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattat |
216 |
Q |
| |
|
| || |||||||| || |||||||| || || || || |||||||||||||| || ||||||||| | ||||| || |||||||| ||||| ||||| || |
|
|
| T |
2438707 |
tgcagattctccaaactaaattcttgaccttgggaggcactttcaatctccaaattccactccaaaacccaggtttgcgcagatgttcattgttaatgat |
2438608 |
T |
|
| Q |
217 |
ttcttcaatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatca |
284 |
Q |
| |
|
||||| || || | ||||| | |||||||| || || ||||||| |||||||| ||||| |||| |
|
|
| T |
2438607 |
atcttcgatacaggtgcggtaggcgcttttaactgagtagcacccatttttctccgccttccatatca |
2438540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 2982 - 3122
Alignment:
| Q |
1 |
cttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttaccctt |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2982 |
cttacaatgaaacaaaatatgataactgtcttcatgtggatcttcacacataacacaattcgaagggcaattaacacctctgcttcgtaactttaccctt |
3081 |
T |
|
| Q |
101 |
gttgggaaacaatctctacaaattctccacaccaaattctt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3082 |
gttgggaaacaatctctacaaattctccacaccagattctt |
3122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 7994485 - 7994194
Alignment:
| Q |
17 |
atatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctc |
116 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| || |||||| ||| |||||||| || ||||||||||| | |||||||| |||||| || || |||| |
|
|
| T |
7994485 |
atatgatagctatcttcatgggg-tcttcacatatgacacaagctgatgggcaattgacgcctctgcttcgcatctttacccgtgttggaaagcagtctc |
7994387 |
T |
|
| Q |
117 |
tacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattat |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || || || ||||||||||| || ||||||||||| ||||| || || | |||||| ||||| ||||| |
|
|
| T |
7994386 |
tacaaattctccacaccaaattcttgactttgggaggtacattcaatctccatataccactccaatatccaggtttccggaaatgatcgttatttattat |
7994287 |
T |
|
| Q |
217 |
ttcttcaatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatcaacctatccatgagaacttgttggtg |
309 |
Q |
| |
|
|||||||| || || |||||| |||| |||||||||||||||||| ||| || || ||||||| ||| ||||||| | ||||||||||| |
|
|
| T |
7994286 |
gtcttcaatacaaatgcggtaaacacttctaacagaataacacccattcttgtctgccttccaaactaacttatccatctggacttgttggtg |
7994194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 28162706 - 28162914
Alignment:
| Q |
17 |
atatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctc |
116 |
Q |
| |
|
|||||||| || |||||||| || ||||||||| ||||||||| || || ||||| ||||| | ||||| | ||| ||||||||||| ||||| |||| |
|
|
| T |
28162706 |
atatgatagctatcttcatgagggtcttcacacctaacacaatccgacggacaattgacacccttacttcgcagcttcacccttgttggaaaacagtctc |
28162805 |
T |
|
| Q |
117 |
tacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattat |
216 |
Q |
| |
|
| ||||| ||||| || ||||||||||| || || || ||||||||||||||||||||||||||||| || || | |||||||||||||| || || | |
|
|
| T |
28162806 |
tgcaaatgctccatactaaattcttaaccttggggggcactttcaatctccagatgccactccaatacccgggtctacgcagatgatcattgtttatgac |
28162905 |
T |
|
| Q |
217 |
ttcttcaat |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
28162906 |
ttcttcaat |
28162914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 25749500 - 25749638
Alignment:
| Q |
69 |
aattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctcca |
168 |
Q |
| |
|
|||||||||| || |||| | ||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||||| || || || |||||||||||||| |
|
|
| T |
25749500 |
aattaacaccccttgttcgcagcttcacccttgttggaaaacagtctctgcaaattctccaaactaaattcttaaccttggggggcactttcaatctcca |
25749599 |
T |
|
| Q |
169 |
gatgccactccaatagccaggctttcgcagatgatcatt |
207 |
Q |
| |
|
|||||||||||| || ||||| | |||||||| ||||| |
|
|
| T |
25749600 |
gatgccactccagtacccaggtctacgcagatggtcatt |
25749638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 329
Target Start/End: Original strand, 20089801 - 20090100
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||| ||| |||| || ||||||||||| || || |||| ||||| |||||||||||||||||||||| |
|
|
| T |
20089801 |
tcttcataggggtcttcacacataacacacgttgatgggtaatttacgcctctgcttcgcaatttaacccgtgttga-aaacaatctctacaaattctcc |
20089899 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttcaatgca |
228 |
Q |
| |
|
||||||| ||||| ||||| || || |||||||| ||||| || ||||| ||||| ||||| |||| ||||||||||||||| |||| |||||||| || |
|
|
| T |
20089900 |
acaccaagttcttgactttgggaggtactttcaacctccatataccacttcaatacccaggttttcacagatgatcattatttattacgtcttcaataca |
20089999 |
T |
|
| Q |
229 |
catacggtaaggacttttaacagaataacacccatccttctccgctttccaaatcaacctatccatgagaacttgttggtgcaatggggtattcaagata |
328 |
Q |
| |
|
|| |||||| |||| ||| |||||||||| ||| ||||||||| ||||||| || | ||||||| | ||||||||||| || || |||||||| ||| |
|
|
| T |
20090000 |
aatgtggtaagtacttctaagagaataacactcattcttctccgccttccaaaccagcttatccatatggacttgttggtgtaagggagtattcaaaata |
20090099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 25552567 - 25552328
Alignment:
| Q |
16 |
gatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatct |
115 |
Q |
| |
|
||||||||| || |||||||| |||| |||||| | ||||||| || || ||||| ||||| || || || ||||| || |||||||| ||||| ||| |
|
|
| T |
25552567 |
gatatgatagctatcttcatgcagatcatcacacctgacacaatcagagggacaattgacacccctactacgcaacttcactcttgttggcaaacagtct |
25552468 |
T |
|
| Q |
116 |
ctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaatta |
215 |
Q |
| |
|
|||||||||||||| | || |||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||| | |
|
|
| T |
25552467 |
ctacaaattctccatatcagattcttgactttaggaggcactttcaatctccagataccactccaatatccaggtttgcgcagatgatcattgttaatga |
25552368 |
T |
|
| Q |
216 |
tttcttcaatgcacatacggtaaggacttttaacagaata |
255 |
Q |
| |
|
| ||||||| ||| ||||| |||| ||||||||||||||| |
|
|
| T |
25552367 |
tatcttcaaggcagatacgataagcacttttaacagaata |
25552328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 17458726 - 17458524
Alignment:
| Q |
8 |
tgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttggga |
107 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||| | ||||| | || ||| || || | || ||||||||| ||| | | || |||| |
|
|
| T |
17458726 |
tgaaacaagatatggtagctatcttcatggggatcttcacacctgacacactctggaggacagttgatgcccttgcttcgtagcttcatacgagtcggga |
17458627 |
T |
|
| Q |
108 |
aacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcatt |
207 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| ||||| || |||||||| | ||||||||| ||||||||||| || || || |||| ||||||||| |
|
|
| T |
17458626 |
aacaatctctgcatattctccataccaaattctttactttggggggaacttttagtctccagataccactccaataccctggtttgcgcaaatgatcatt |
17458527 |
T |
|
| Q |
208 |
att |
210 |
Q |
| |
|
||| |
|
|
| T |
17458526 |
att |
17458524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 15065261 - 15065050
Alignment:
| Q |
23 |
taactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaa |
122 |
Q |
| |
|
||||| ||||||||||| || |||||| | ||||| | ||| ||||| ||||||||||| ||||||| || || | ||||| |||||||||||||| | |
|
|
| T |
15065261 |
taactatcttcatgggggtcatcacacctgacacattctgaggggcagttaacacctctacttcgtagtttcacacgagttggcaaacaatctctacaga |
15065162 |
T |
|
| Q |
123 |
ttctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttc |
222 |
Q |
| |
|
||||||| ||||| ||||| ||||| || | ||||| |||||||||||| |||||||||| || || || |||| ||| ||||| || || | |||||| |
|
|
| T |
15065161 |
ttctccataccaagttcttgactttgggatggacttttaatctccagatgtcactccaataccctggtttgcgcaaatggtcattgttgatgacttcttc |
15065062 |
T |
|
| Q |
223 |
aatgcacatacg |
234 |
Q |
| |
|
||||| ||||| |
|
|
| T |
15065061 |
tatgcagatacg |
15065050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 29600322 - 29600058
Alignment:
| Q |
20 |
tgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctac |
119 |
Q |
| |
|
||||| || |||||||| || || |||||| ||||||| | || || ||||| ||||| |||||||||| ||| || || ||||| ||||| ||||||| |
|
|
| T |
29600322 |
tgatagctatcttcatgtgggtcgtcacacctaacacactcagagggacaattgacacccctgcttcgtagcttcactctagttggaaaacagtctctac |
29600223 |
T |
|
| Q |
120 |
aaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttc |
219 |
Q |
| |
|
|||||||||| | ||||||||| ||||| || || ||||||| ||||||||| ||||||||||| ||||| || |||||||||||||| || || || || |
|
|
| T |
29600222 |
aaattctccatatcaaattcttgactttgggaggcactttcagtctccagataccactccaatatccaggtttgcgcagatgatcattgtttatgatatc |
29600123 |
T |
|
| Q |
220 |
ttcaatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatca |
284 |
Q |
| |
|
||||||||| || || |||| |||||| |||||||| ||||| ||||||||| ||||| |||| |
|
|
| T |
29600122 |
ttcaatgcagattcgataagcacttttgacagaatagtgcccattcttctccgccttccatatca |
29600058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 38533461 - 38533722
Alignment:
| Q |
23 |
taactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaa |
122 |
Q |
| |
|
||||| ||||||||||| || |||||| | ||||| | ||| ||||| ||||||||||||||||||| || || | ||||| |||||||||||||| | |
|
|
| T |
38533461 |
taactatcttcatgggggtcatcacacctgacacattctgaggggcagttaacacctctgcttcgtagtttcacacgagttggaaaacaatctctacaga |
38533560 |
T |
|
| Q |
123 |
ttctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttc |
222 |
Q |
| |
|
||||||| ||||||||||| ||||| || || ||||| | ||||||||||||||| ||||| || || || |||| ||| ||||| || || | |||||| |
|
|
| T |
38533561 |
ttctccataccaaattcttgactttgggggggacttttagtctccagatgccacttcaataccctggtttgcgcaaatggtcattgttgatgacttcttc |
38533660 |
T |
|
| Q |
223 |
aatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatca |
284 |
Q |
| |
|
||||| ||||| || | |||| | ||||||||| |||| |||||||| |||||||||| |
|
|
| T |
38533661 |
tatgcatatacgatatgcacttctcacagaataatggccatttttctccgccttccaaatca |
38533722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 38555679 - 38555940
Alignment:
| Q |
23 |
taactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaa |
122 |
Q |
| |
|
||||| ||||||||||| || |||||| | ||||| | ||| ||||| ||||||||||||||||||| || || | ||||| |||||||||||||| | |
|
|
| T |
38555679 |
taactatcttcatgggggtcatcacacctgacacattctgaggggcagttaacacctctgcttcgtagtttcacacgagttggaaaacaatctctacaga |
38555778 |
T |
|
| Q |
123 |
ttctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttc |
222 |
Q |
| |
|
||||||| ||||||||||| ||||| || || ||||| | ||||||||||||||| ||||| || || || |||| ||| ||||| || || | |||||| |
|
|
| T |
38555779 |
ttctccataccaaattcttgactttgggggggacttttagtctccagatgccacttcaataccctggtttgcgcaaatggtcattgttgatgacttcttc |
38555878 |
T |
|
| Q |
223 |
aatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatca |
284 |
Q |
| |
|
||||| ||||| || | |||| | ||||||||| |||| |||||||| |||||||||| |
|
|
| T |
38555879 |
tatgcatatacgatatgcacttctcacagaataatggccatttttctccgccttccaaatca |
38555940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 25595566 - 25595786
Alignment:
| Q |
8 |
tgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttggga |
107 |
Q |
| |
|
|||||||| | ||||||||| ||||| |||||||| |||||||||||||| | | | || || |||||||||||||||| ||| || || | ||||| | |
|
|
| T |
25595566 |
tgaaacaacaaatgataactatcttcgtggggatcctcacacataacacattctaagggacagttaacacctctgcttcttaatttcacacgagttggaa |
25595665 |
T |
|
| Q |
108 |
aacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcatt |
207 |
Q |
| |
|
|||| ||||| ||||| ||||| || || ||||| ||||| || |||||||| ||||||||||| |||||||| || || || || |||||||||||||| |
|
|
| T |
25595666 |
aacagtctctgcaaatcctccaaactaagttcttgactttcgggggaacttttaatctccagataccactccagtaccccggtttgcgcagatgatcatt |
25595765 |
T |
|
| Q |
208 |
attaattatttcttcaatgca |
228 |
Q |
| |
|
|| |||| |||||| ||||| |
|
|
| T |
25595766 |
gttgattacttcttctatgca |
25595786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 4179300 - 4179095
Alignment:
| Q |
5 |
cagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttg |
104 |
Q |
| |
|
|||||||| | ||||||||| || |||||||| |||||||| || || ||||| | ||||| ||| | || || |||||||||| || || || |||| |
|
|
| T |
4179300 |
cagtgaaagaggatatgatagctatcttcatgaggatcttcgcatatgacacactcagaaggacaagtgacgcccctgcttcgtagtttcactctggttg |
4179201 |
T |
|
| Q |
105 |
ggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatc |
204 |
Q |
| |
|
| || || ||||||||||||||||| | |||||| || ||||| || ||||| |||| | ||||||| ||||||||||| || || || | ||||||||| |
|
|
| T |
4179200 |
gaaagcagtctctacaaattctccaaatcaaatttttgactttgggaggaaccttcagtttccagataccactccaatatcccggtttgcacagatgatc |
4179101 |
T |
|
| Q |
205 |
attatt |
210 |
Q |
| |
|
|||||| |
|
|
| T |
4179100 |
attatt |
4179095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 22161065 - 22160829
Alignment:
| Q |
20 |
tgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctac |
119 |
Q |
| |
|
||||| ||||||||| |||||||||||||| | ||||| | |||||| ||||||||||| |||||| ||| ||| || ||| |||||||||||||||| |
|
|
| T |
22161065 |
tgatagctgtcttcacggggatcttcacacctgacacactctgaaggacaattaacacccctgctttgtagcttcttccgtgtcgggaaacaatctctac |
22160966 |
T |
|
| Q |
120 |
aaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttc |
219 |
Q |
| |
|
|||| | ||| | |||||| || || || || |||||||| | |||| | || ||||||||||| || || || |||| ||||| |||| ||| | ||| |
|
|
| T |
22160965 |
aaatacgccagatcaaattttttaccttggggggaacttttagtctcaaaataccactccaataccctggtttacgcaaatgattgttatcaataacttc |
22160866 |
T |
|
| Q |
220 |
ttcaatgcacatacggtaaggacttttaacagaataa |
256 |
Q |
| |
|
|| || || || ||||||| |||| |||| |||||| |
|
|
| T |
22160865 |
ctctatacatatccggtaagcacttctaaccgaataa |
22160829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 26419567 - 26419748
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||| |||||||| || ||||||||| ||| |||||||||| || || || |||||||| | ||||| |
|
|
| T |
26419567 |
tcttcatgtggatcctcacacttaacacaggctgatgggcaatttactcctctgcttatcaaccttacccttgtaggaaagcattctctacacactctcc |
26419666 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattatt |
210 |
Q |
| |
|
| || |||||||| ||| | || || || ||||||||||| || ||||||||||| || || || |||| |||| ||||||| |
|
|
| T |
26419667 |
atactaaattcttcactcttgggggtaccttcaatctccatataccactccaataccctggtttccgcaaatgagcattatt |
26419748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 31882086 - 31882008
Alignment:
| Q |
104 |
gggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaat |
182 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||| || || ||||||||| || | ||||||||||||| |
|
|
| T |
31882086 |
gggaaacaatctctacaaattcgtcataccaagttcttaacttttggaggtactttcaatttctatatgccactccaat |
31882008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 19498849 - 19498726
Alignment:
| Q |
163 |
tctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttcaatgcacatacggtaaggacttttaacagaataacaccca |
262 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||| ||||||||||| ||| |
|
|
| T |
19498849 |
tctccatataccactccaataaccaggctttcgcagatgatcattattaattatttcttcaatacacatgcgataagcactttttacagaataacatcca |
19498750 |
T |
|
| Q |
263 |
tccttctccgctttccaaatcaac |
286 |
Q |
| |
|
| ||||| |||||||||||||||| |
|
|
| T |
19498749 |
ttcttcttcgctttccaaatcaac |
19498726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 10515461 - 10515308
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
|||||||| || ||||||||| | ||||| | |||| | || || ||||| |||||||||| || |||| |||||| ||||| |||||||||||||||| |
|
|
| T |
10515461 |
tcttcatgagggtcttcacacctgacacactctgaatgacagttgacacccctgcttcgtagctacacccgtgttggaaaacagtctctacaaattctcc |
10515362 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaat |
182 |
Q |
| |
|
||||||||||||| ||||| || || |||||||||||||| || |||||||||| |
|
|
| T |
10515361 |
acaccaaattcttgactttgggaggcactttcaatctccatataccactccaat |
10515308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 15950087 - 15949906
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||| |||||||| || ||||||||| ||| |||||||||| || || || |||||||| | ||||| |
|
|
| T |
15950087 |
tcttcatgtggatcctcacacttaacacaggctgatgggcaatttactcctctgcttatcaaccttacccttgtaggaaagcattctctacacactctcc |
15949988 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattatt |
210 |
Q |
| |
|
| || |||||||| | | | || || || ||||||||||| || ||||||||||| || || || ||||||||| ||||||| |
|
|
| T |
15949987 |
atactaaattcttcaatcttgggggtaccttcaatctccatataccactccaataccctggtttccgcagatgagcattatt |
15949906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 15957541 - 15957360
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||| |||||||| || |||||| || ||| |||||||||| || || || |||||||| | ||||| |
|
|
| T |
15957541 |
tcttcatgtggatcctcacacttaacacatgctgatgggcaatttactcctctgtttatcaaccttacccttgtaggaaagcattctctacacactctcc |
15957442 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattatt |
210 |
Q |
| |
|
| || |||||||| ||| | || || | ||||||||||| || ||||||||||| || || || ||||||||| ||||||| |
|
|
| T |
15957441 |
atactaaattcttcactcttgggggtgccttcaatctccatataccactccaataccctggtttccgcagatgagcattatt |
15957360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 33098351 - 33098307
Alignment:
| Q |
138 |
tcttaactttaggtggaactttcaatctccagatgccactccaat |
182 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||||||||||| |
|
|
| T |
33098351 |
tcttaactttcggaggcactttcaatctccacatgccactccaat |
33098307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1689 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1689
Description:
Target: scaffold1689; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 218 - 22
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
|||||||| || ||||| ||| |||||||| || || ||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||| |
|
|
| T |
218 |
tcttcatgagggtcttcgcacctaacacaacccgatggacaattaacacccctgcttcgcaacttcacccttgttggaaaacagtctctgcagattctcc |
119 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttcaat |
225 |
Q |
| |
|
| || ||||||||||||||||| || |||||||||||||| ||||| |||||||| ||||| || |||||||| ||||| || || || |||||||| |
|
|
| T |
118 |
aaactaaattcttaactttagggggcactttcaatctccatatgccgctccaatacccaggtttacgcagatgttcattgtttataatatcttcaat |
22 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 12282 - 12454
Alignment:
| Q |
17 |
atatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctc |
116 |
Q |
| |
|
|||||||| || |||||||| || ||||||||| ||||||||| || || ||||||||||| || ||| | | ||| ||||||||||| ||||| |||| |
|
|
| T |
12282 |
atatgatagctatcttcatgagggtcttcacacctaacacaatccgacggacaattaacacccctactttgcagcttcacccttgttggaaaacagtctc |
12381 |
T |
|
| Q |
117 |
tacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccagg |
189 |
Q |
| |
|
| |||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12382 |
tgcaaattctccacactaaattcttaaccttggggggcactttcaatctccagatgccactccaatacccagg |
12454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 21085746 - 21085982
Alignment:
| Q |
16 |
gatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatct |
115 |
Q |
| |
|
||||||||| || |||||||| || || |||||| | ||||||| | || || || ||||| |||||||||| ||| || || ||||| ||||| ||| |
|
|
| T |
21085746 |
gatatgatagctatcttcatgtgggtcgtcacacctgacacaatcaaagggacagttgacacccctgcttcgtagcttcactctagttggaaaacagtct |
21085845 |
T |
|
| Q |
116 |
ctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaatta |
215 |
Q |
| |
|
||||| |||||||| | ||| ||||| |||||||| || ||||||||| ||||||| ||||||||||| ||||| || |||||||||||||| ||||| | |
|
|
| T |
21085846 |
ctacagattctccatatcaagttcttgactttaggaggcactttcaatttccagataccactccaatatccaggtttgcgcagatgatcattgttaatga |
21085945 |
T |
|
| Q |
216 |
tttcttcaatgcacatacggtaaggacttttaacaga |
252 |
Q |
| |
|
| ||||||||||| || ||||||| |||||| ||||| |
|
|
| T |
21085946 |
tatcttcaatgcagattcggtaagcacttttgacaga |
21085982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 34072211 - 34072306
Alignment:
| Q |
115 |
tctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||| || |||| |||||||||||| |
|
|
| T |
34072211 |
tctacaaattctccacaccaaattcttgactttggggggaactttcaatctccagatgccactccaatacccaggtttgcgcaaatgatcattatt |
34072306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 7860894 - 7860713
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| |||| || ||||| || ||||||||| ||| |||||||||| ||||| || |||||||| | ||||| |
|
|
| T |
7860894 |
tcttcatgtggatcctcacacttaacacaagttgatggacaattgactcctctgcttatcaaccttacccttgtagggaagcattctctacacactctcc |
7860795 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattatt |
210 |
Q |
| |
|
| || |||||||| ||| | || || || ||||||||||| || ||||||||||| || || || ||||||||| ||||||| |
|
|
| T |
7860794 |
atactaaattcttcactcttgggggtaccttcaatctccatataccactccaataccctggtttccgcagatgagcattatt |
7860713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 27071676 - 27071513
Alignment:
| Q |
20 |
tgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctac |
119 |
Q |
| |
|
|||||||| ||||||||||| ||||| || | ||||| | |||||||||||||||||| |||||| ||| ||| || ||| |||||||||||||||| |
|
|
| T |
27071676 |
tgataactatcttcatgggggtcttcgcatctgacacactctgaagggcaattaacacccctgctttgtagcttcttccgtgtcgggaaacaatctctac |
27071577 |
T |
|
| Q |
120 |
aaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaata |
183 |
Q |
| |
|
|||| ||||| | |||| | || || || || || ||||| | |||||| || ||||||||||| |
|
|
| T |
27071576 |
aaatgctccagatcaaactttttaccttggggggtacttttagtctccaaataccactccaata |
27071513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 20470490 - 20470254
Alignment:
| Q |
20 |
tgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctac |
119 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| | ||||| | |||||| ||||||||||| || ||| ||||||| || ||| ||||| |||||| ||| |
|
|
| T |
20470490 |
tgatagctatcttcatgggggtcttcgcacctgacacattctgaaggacaattaacaccccttctttgtaacttcttccgtgtcgggaagcaatctttac |
20470391 |
T |
|
| Q |
120 |
aaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttc |
219 |
Q |
| |
|
|||| | ||| | |||| | || || || || |||||||| | |||||| || ||||||||||| || || || |||| ||||| |||||||||| ||| |
|
|
| T |
20470390 |
aaatgcgccagatcaaactttttaccttggggggaacttttagtctccaaataccactccaataccctggtttacgcaaatgattgttattaattacttc |
20470291 |
T |
|
| Q |
220 |
ttcaatgcacatacggtaaggacttttaacagaataa |
256 |
Q |
| |
|
|| || || || ||||||| |||| |||| |||||| |
|
|
| T |
20470290 |
ctctatacatatccggtaagcacttctaaccgaataa |
20470254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 31425778 - 31425573
Alignment:
| Q |
5 |
cagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttg |
104 |
Q |
| |
|
|||||||| | ||||||||| || |||||||| || |||| ||||| ||||| | || || ||| | ||||| |||||||||| || || || |||| |
|
|
| T |
31425778 |
cagtgaaagaggatatgatagctatcttcatgagggtctttgcacatgacacactcggatggacaagtgacaccactgcttcgtagtttcactctggttg |
31425679 |
T |
|
| Q |
105 |
ggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatc |
204 |
Q |
| |
|
| || || ||||||||||||||||| | |||||| || ||||| || || || ||| ||||||||| ||||||||||| || || || | || |||||| |
|
|
| T |
31425678 |
gaaagcagtctctacaaattctccaaatcaaatttttgactttgggagggaccttcggtctccagataccactccaatatcccggtttgcacaaatgatc |
31425579 |
T |
|
| Q |
205 |
attatt |
210 |
Q |
| |
|
|||||| |
|
|
| T |
31425578 |
attatt |
31425573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 235469 - 235730
Alignment:
| Q |
23 |
taactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaa |
122 |
Q |
| |
|
||||| ||||||||||| || |||||| | ||||| | ||| ||||| ||||||||| |||||||||| || || | ||||| ||||| |||||||| | |
|
|
| T |
235469 |
taactatcttcatgggggtcctcacacctgacacattctgaggggcagttaacacctttgcttcgtaatttcacacgagttggaaaacagtctctacaga |
235568 |
T |
|
| Q |
123 |
ttctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattatttcttc |
222 |
Q |
| |
|
||||||| ||||| ||||| ||||| || | ||||| ||||||||||| ||||||||||| || || || |||||||| ||||| || |||| |||||| |
|
|
| T |
235569 |
ttctccataccaagttcttgactttgggggacacttttaatctccagataccactccaataccccggtttgcgcagatggtcattgttgattacttcttc |
235668 |
T |
|
| Q |
223 |
aatgcacatacggtaaggacttttaacagaataacacccatccttctccgctttccaaatca |
284 |
Q |
| |
|
||||| ||||| |||| |||| | ||||||||| |||| |||||||| |||||||||| |
|
|
| T |
235669 |
tatgcagatacgataagcacttctcacagaataatggccatttttctccgccttccaaatca |
235730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 5611685 - 5611845
Alignment:
| Q |
23 |
taactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaa |
122 |
Q |
| |
|
||||||||||||||||| ||||| ||| | ||||| | ||| ||| |||| ||||| |||||||||| ||| || | || || |||||||||||||||| |
|
|
| T |
5611685 |
taactgtcttcatgggggtcttcgcacctgacacactctgaggggtaattgacacccctgcttcgtagcttcacacgagtcggaaaacaatctctacaaa |
5611784 |
T |
|
| Q |
123 |
ttctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaata |
183 |
Q |
| |
|
|||||||| |||||||||| ||||| || |||||||||| ||||||||||||||||||||| |
|
|
| T |
5611785 |
ttctccacgccaaattcttgactttggggggaactttcagtctccagatgccactccaata |
5611845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 33972401 - 33972190
Alignment:
| Q |
17 |
atatgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctc |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||||| || || ||||| ||||| || ||||| | ||| ||||| ||||| ||||| |||| |
|
|
| T |
33972401 |
atatgataactatcttcatgggggtcttcacacctaacacaacccgacggacaattgacacccctacttcgcagcttcaccctagttggaaaacagtctc |
33972302 |
T |
|
| Q |
117 |
tacaaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattat |
216 |
Q |
| |
|
| ||||||||||| || |||||| | ||||| ||||| |||||||||||||| |||||||||||||| ||||| | |||||||| ||||| || || | |
|
|
| T |
33972301 |
tgcaaattctccatactaaattcatgacttttggtggcactttcaatctccatatgccactccaatacccaggtctgcgcagatggtcattgtttatgac |
33972202 |
T |
|
| Q |
217 |
ttcttcaatgca |
228 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
33972201 |
ttgttcaatgca |
33972190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 5085910 - 5085695
Alignment:
| Q |
19 |
atgataactgtcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctcta |
118 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||| ||| || || ||||||||||||| || |||||| || | ||||| ||||| |||||| |
|
|
| T |
5085910 |
atgataactatcttcgtggggatcctcacacataacacatactgagggacagttaacacctctgcctcttaacttcacacgagttggaaaacagtctcta |
5085811 |
T |
|
| Q |
119 |
caaattctccacaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattattaattattt |
218 |
Q |
| |
|
||||| ||||| || || ||||| ||||| || |||||||| | ||||||||| |||||||| || || || || |||| ||||||||| || |||| || |
|
|
| T |
5085810 |
caaatcctccaaactaagttcttgactttcgggggaacttttagtctccagataccactccagtatcctggtttgcgcaaatgatcattgttgattactt |
5085711 |
T |
|
| Q |
219 |
cttcaatgcacatacg |
234 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
5085710 |
cttctatgcagatacg |
5085695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 29526115 - 29525934
Alignment:
| Q |
29 |
tcttcatggggatcttcacacataacacaatttgaagggcaattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctcc |
128 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||| |||||||| || ||||||||| ||| |||||||||| || || || |||||||| | ||||| |
|
|
| T |
29526115 |
tcttcatgtggatcctcacacttaacacaggctgatgggcaatttactcctctgcttatcaaccttacccttgtaggaaagcattctctacacactctcc |
29526016 |
T |
|
| Q |
129 |
acaccaaattcttaactttaggtggaactttcaatctccagatgccactccaatagccaggctttcgcagatgatcattatt |
210 |
Q |
| |
|
| || || ||||| ||| | || || || ||||||||||| || ||||||||||| || || || ||||||||| ||||||| |
|
|
| T |
29526015 |
atactaatttcttcactcttgggggtaccttcaatctccatataccactccaataccctggtttccgcagatgagcattatt |
29525934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1460 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold1460
Description:
Target: scaffold1460; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 284
Target Start/End: Original strand, 4 - 220
Alignment:
| Q |
68 |
caattaacacctctgcttcgtaactttacccttgttgggaaacaatctctacaaattctccacaccaaattcttaactttaggtggaactttcaatctcc |
167 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||||| || ||||||||||| ||||| || ||||||||||||| |
|
|
| T |
4 |
caattaacacccctgcttcgcaacttcacccttgttggaaaacagtctctgcagattctccaaactaaattcttaaccttagggggcactttcaatctcc |
103 |
T |
|
| Q |
168 |
agatgccactccaatagccaggctttcgcagatgatcattattaattatttcttcaatgcacatacggtaaggacttttaacagaataacacccatcctt |
267 |
Q |
| |
|
| ||||| |||||||| | ||| || |||||||| ||||| || || || |||||||| || |||| || | ||| |||| || |||||||||| || |
|
|
| T |
104 |
atatgccgctccaatacctaggtttacgcagatgttcattgtttatgatatcttcaatacaagtacgataggcgcttctaactgagtaacacccattttt |
203 |
T |
|
| Q |
268 |
ctccgctttccaaatca |
284 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
204 |
ctctgccttccaaatca |
220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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