View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_46 (Length: 341)
Name: NF0857_low_46
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 100 - 326
Target Start/End: Complemental strand, 49279588 - 49279362
Alignment:
| Q |
100 |
gagactgaacgagctagagcaatatttgagtctgtaattgctcgaccagagcctgagttgttatggaaggcattccttgattttgagactgctaagattg |
199 |
Q |
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| T |
49279588 |
gagactgaacgagctagagcaatatttgagtctgcaattgctcgaccagagcatgagttgttatggaaggcattccttgattttgagactgctaagattg |
49279489 |
T |
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| Q |
200 |
aatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctac |
299 |
Q |
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| T |
49279488 |
aatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctac |
49279389 |
T |
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| Q |
300 |
ttataaggcgggtttagaacaaaagaa |
326 |
Q |
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| T |
49279388 |
ttataaggcgggtttagaacaaaagaa |
49279362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 98 - 327
Target Start/End: Complemental strand, 49276033 - 49275795
Alignment:
| Q |
98 |
cagagactgaacgagctagagcaatatttgagtctgtaattgctcgaccaga---------gcctgagttgttatggaaggcattccttgattttgagac |
188 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||||| |||||||||||| |
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| T |
49276033 |
cagagactgaacgagctagagcaatatttgagtctgcaattgctcgaccagaattggtaaagcaagagttgttttggaaggcattccatgattttgagac |
49275934 |
T |
|
| Q |
189 |
tgctaagattgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaa |
288 |
Q |
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| T |
49275933 |
tgctaagtgtgaatttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttgaa |
49275834 |
T |
|
| Q |
289 |
gcaacagctacttataaggcgggtttagaacaaaagaag |
327 |
Q |
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| T |
49275833 |
gcaacagctacttataaagcgggtttagaacaaaagaag |
49275795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 34790146 - 34790274
Alignment:
| Q |
167 |
aggcattccttgattttgagactgctaagattgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatg |
266 |
Q |
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|||||| | |||||||||| |||| | || ||||||||||||| ||||||||| ||||||||| ||| | || | | |||||| |||| || |||| |
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| T |
34790146 |
aggcatacgttgattttgaaactgttgagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagca---cttgaaggtatg |
34790242 |
T |
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| Q |
267 |
gataagctatgcagagtttgaagcaacagcta |
298 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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| T |
34790243 |
gatgagctatgcagagtttgaagcaacagcta |
34790274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 2289046 - 2289017
Alignment:
| Q |
100 |
gagactgaacgagctagagcaatatttgag |
129 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2289046 |
gagactgaacgagctagagcaatatttgag |
2289017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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