View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_5 (Length: 593)
Name: NF0857_low_5
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 65 - 415
Target Start/End: Complemental strand, 35418040 - 35417695
Alignment:
| Q |
65 |
tgaagcacatcatgttaattagtgagaggagcaaaaccagcatatggtaaccgatacacccgccgggttacattctgatccattataaggcaaccacgtg |
164 |
Q |
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|||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35418040 |
tgaagcacatgaggttaattagtgagaggagcaaagccagcatatggtaaccgatacacccgccgggttacattctgatccattataaggcaaccacgtg |
35417941 |
T |
|
| Q |
165 |
acttctgaaactcnnnnnnncaaaacaattacctctcccnnnnnnncctcattcatttctactctgtctttcccattcccttcaataattgggtttggga |
264 |
Q |
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|||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417940 |
acttctgaaacttaaaaaaacaaaacaataacctctcccttttttcc-----tcatttctactctgtctttcccattcccttcaataattgggtttggga |
35417846 |
T |
|
| Q |
265 |
gaaaaacaaaatcccaacacaaacaaagccctctaacaaaattataacttactcctccttcctacaaatcccatatttgtttatttttgttgctaaaact |
364 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417845 |
gaaaaacaaaatcccaacacaaacaaaaccctctaacaaaattataacttactcctccttcctacaaatcccatatttgtttatttttgttgctaaaact |
35417746 |
T |
|
| Q |
365 |
atttgccaacaaactcataccttcctcttattctcttgttttttccttcat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417745 |
atttgccaacaaactcataccttcctcttattctcttgttttttccttcat |
35417695 |
T |
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