View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_55 (Length: 318)
Name: NF0857_low_55
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 38367019 - 38366852
Alignment:
| Q |
56 |
agatgaaagtcccaccacgtagtagaacgtgttaaaaggagaggttgtgctaacttccaagtaccaaacaagccatataacttagcataagtttctcatc |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38367019 |
agatgaaagtcccaccacgtagtagaacgtgttaaaaggaaaggttgtgctaacttccaagtaccaaacaagccatataccttagcataagtttctcatc |
38366920 |
T |
|
| Q |
156 |
tctctaaccttgaacaattagnnnnnnnaattagcattagcatggaaaataaactttttcttgttttt |
223 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
38366919 |
tctctaaccttgaacaattagtttttttaattagcattagcatggaaaataaactttttcttcttttt |
38366852 |
T |
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