View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_57 (Length: 314)
Name: NF0857_low_57
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 10452588 - 10452830
Alignment:
| Q |
7 |
gagagaagaattaaacctcgttacttaggttatgagaccaatcacnnnnnnnnagaccattttgttaccactaagctagcacatattggactctcaatgc |
106 |
Q |
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| T |
10452588 |
gagagaagaattaaacctcgttacttaggttatgagaccaataactttttttaagaccattttgttaccattaagctagcacatattggactctcaatgc |
10452687 |
T |
|
| Q |
107 |
attaaagcaccaataaaaagggccactccnnnnnnnnnnnncaccaataaaaggaataaaaggctctttagcgagaatttcttagaaggtaattgagaat |
206 |
Q |
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||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
10452688 |
attaaagcaccaataaaaagggctactccaaaaaaaaaag-cacgaataaaaggaataaaaggctctttagagagaatttctta--aggtaattgagaat |
10452784 |
T |
|
| Q |
207 |
atatttcctagtacattgtatatgatatctgaaactcagaaaatga |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10452785 |
atatttcctagtacattgtatatgatatctgaaactcagaaaatga |
10452830 |
T |
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