View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_6 (Length: 591)
Name: NF0857_low_6
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 65 - 413
Target Start/End: Complemental strand, 35418040 - 35417695
Alignment:
| Q |
65 |
tgaagcacatcatgttaattagtgagaggagcaaaaccagcatatggtaaccgatacacccgccgggttacattctgatccattataaggcaaccacgtg |
164 |
Q |
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|||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35418040 |
tgaagcacatgaggttaattagtgagaggagcaaagccagcatatggtaaccgatacacccgccgggttacattctgatccattataaggcaaccacgtg |
35417941 |
T |
|
| Q |
165 |
acttctgaaactcnnnnnnncaaaacaattacctctccctttttcctcattcatttctactctgtctttcccattcccttcaataattgggtttgggaga |
264 |
Q |
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|||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417940 |
acttctgaaacttaaaaaaacaaaacaataacctctcccttttttcc---tcatttctactctgtctttcccattcccttcaataattgggtttgggaga |
35417844 |
T |
|
| Q |
265 |
aaaacaaaatcccaacacaaacaaagccctctaacaaaattataacttactcctccttcctacaaatcccatatttgtttatttttgttgctaaaactat |
364 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417843 |
aaaacaaaatcccaacacaaacaaaaccctctaacaaaattataacttactcctccttcctacaaatcccatatttgtttatttttgttgctaaaactat |
35417744 |
T |
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| Q |
365 |
ttgccaacaaactcataccttcctcttattctcttgttttttccttcat |
413 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35417743 |
ttgccaacaaactcataccttcctcttattctcttgttttttccttcat |
35417695 |
T |
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