View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_78 (Length: 296)
Name: NF0857_low_78
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 4941895 - 4942028
Alignment:
| Q |
108 |
aaacgacgccgttccgtcattttccgataaatcaactctcctccgcttcaaagcctctctttccgacccatccgccgttctctccacctggagctctact |
207 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4941895 |
aaacgacgccgtttcgtcattttccgataaatcaactctcctccgcttcaaagcctctctttccgacccatccgccgttctctccacctggagctctact |
4941994 |
T |
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| Q |
208 |
gccaaccactgttccttctacggagttctctgtg |
241 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4941995 |
gccaaccactgttccttctacggagttctctgtg |
4942028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 4927517 - 4927384
Alignment:
| Q |
108 |
aaacgacgccgttccgtcattttccgataaatcaactctcctccgcttcaaagcctctctttccgacccatccgccgttctctccacctggagctctact |
207 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4927517 |
aaacgacgccgtttcatcattttccgataaatcaactctcctccgcttcaaagcctctctttccgacccatccgccgttctctccacctggagctctact |
4927418 |
T |
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| Q |
208 |
gccaaccactgttccttctacggagttctctgtg |
241 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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| T |
4927417 |
gccaaccactgttccttctatggagttctctgtg |
4927384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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