View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_79 (Length: 295)
Name: NF0857_low_79
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 51216333 - 51216591
Alignment:
| Q |
29 |
acgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216333 |
acgtgtggcaattgcaagagccatagttaacaggccaagaatattactactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaa |
51216432 |
T |
|
| Q |
129 |
gatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216433 |
gatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatg |
51216532 |
T |
|
| Q |
229 |
gagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcacctatgct |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216533 |
gagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcacctatgct |
51216591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 68 - 256
Target Start/End: Complemental strand, 29934017 - 29933829
Alignment:
| Q |
68 |
aatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccatt |
167 |
Q |
| |
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|||| ||||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | ||||||| |||| || || |
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| T |
29934017 |
aatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttgactgtgttatggtggaccgaacaacaata |
29933918 |
T |
|
| Q |
168 |
gtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
256 |
Q |
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| || |||||||| ||||| || |||||||||||| ||| ||||||||| ||||| ||||| ||||| |||||||||||||||||| |
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| T |
29933917 |
atagtagctcataggttatcgactataaagggtgcagatttaattgcagtcgttaagaatggtgtgatatcagagaaaggaaaacatga |
29933829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 51149111 - 51149337
Alignment:
| Q |
30 |
cgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaag |
129 |
Q |
| |
|
|||||||||||||| ||||| ||||| || | |||| |||| ||||||||||||| || || ||||| |||||||| ||||||||||||||||| |||| |
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| T |
51149111 |
cgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaag |
51149210 |
T |
|
| Q |
130 |
atgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatgg |
229 |
Q |
| |
|
|||||||||| | || | |||||| |||| || || | ||||| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| |
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| T |
51149211 |
atgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatgg |
51149310 |
T |
|
| Q |
230 |
agtgattgaagagaaaggaaaacatga |
256 |
Q |
| |
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||||| | |||||||||||||||||| |
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|
| T |
51149311 |
tgtgatagcagagaaaggaaaacatga |
51149337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 51159974 - 51160200
Alignment:
| Q |
30 |
cgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaag |
129 |
Q |
| |
|
||||||||||||||| |||| ||||| || | |||| |||| ||||||||||||| || || ||||| |||||||| ||||||||||||||||| |||| |
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| T |
51159974 |
cgtgtggcaattgcacgagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaag |
51160073 |
T |
|
| Q |
130 |
atgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatgg |
229 |
Q |
| |
|
|||||||||| | || | |||||| |||| || || | ||||| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| |
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| T |
51160074 |
atgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatgg |
51160173 |
T |
|
| Q |
230 |
agtgattgaagagaaaggaaaacatga |
256 |
Q |
| |
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||||| | |||||||||||||||||| |
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|
| T |
51160174 |
tgtgatagcagagaaaggaaaacatga |
51160200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 51202673 - 51202899
Alignment:
| Q |
30 |
cgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaag |
129 |
Q |
| |
|
|||||||||||||| ||||| ||||| || | |||| |||| ||||||||||||| || || ||||| |||||||| |||||||| || ||||| |||| |
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| T |
51202673 |
cgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaag |
51202772 |
T |
|
| Q |
130 |
atgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatgg |
229 |
Q |
| |
|
|||||||||| | || | |||||| |||| || || | ||||| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| |
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| T |
51202773 |
atgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatgg |
51202872 |
T |
|
| Q |
230 |
agtgattgaagagaaaggaaaacatga |
256 |
Q |
| |
|
||||| | |||||||||||||||||| |
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|
| T |
51202873 |
tgtgatagcagagaaaggaaaacatga |
51202899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 49734169 - 49733911
Alignment:
| Q |
29 |
acgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
49734169 |
acgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcat |
49734070 |
T |
|
| Q |
129 |
gatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatg |
228 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||||||| |||||||||| |
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| T |
49734069 |
gatgcacttgatagattgagggtggacagaaccaccattgtggtggctcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatg |
49733970 |
T |
|
| Q |
229 |
gagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcacctatgct |
287 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| |||||||| |||| ||||||||| |
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|
| T |
49733969 |
gagtgattgaagagaaaggaaagcatgaaacgttgctcaacaagagtggtacctatgct |
49733911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 36289004 - 36289245
Alignment:
| Q |
30 |
cgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaag |
129 |
Q |
| |
|
|||||||||||||||||||| ||| | || | |||| ||||||| |||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| | |
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|
| T |
36289004 |
cgtgtggcaattgcaagagcaatattgaagaatccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtccgaaaaagtagttcagg |
36289103 |
T |
|
| Q |
130 |
atgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatgg |
229 |
Q |
| |
|
||||||| ||| |||| | ||| ||| ||||||| ||| | ||||| || || ||||| || || ||||||||| ||| ||||||||| || || ||||| |
|
|
| T |
36289104 |
atgcactggatcgagttatggttgaccgaaccacaattatagtggcacacaggttatccactattaagggtgcagatttaattgcagtggtgaagaatgg |
36289203 |
T |
|
| Q |
230 |
agtgattgaagagaaaggaaaacatgacatattgatcaacaa |
271 |
Q |
| |
|
|| ||| |||||||||||| ||||| | |||||||||||| |
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|
| T |
36289204 |
ggtcattacagagaaaggaaatcatgaaacattgatcaacaa |
36289245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 42691605 - 42691545
Alignment:
| Q |
81 |
gatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgata |
141 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
42691605 |
gatgaggccactagtgcccttgattcagagtcagaaaagctggttcaagaagcacttgata |
42691545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 49736890 - 49736838
Alignment:
| Q |
78 |
ctagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaaga |
130 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| |||| |||||| ||||| |
|
|
| T |
49736890 |
ctagatgaagcaacaagtgcccttgacgcagagtcggaaagagtggtacaaga |
49736838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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