View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_8 (Length: 578)
Name: NF0857_low_8
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 30 - 565
Target Start/End: Complemental strand, 7830548 - 7830017
Alignment:
| Q |
30 |
tttgcttcgtggtttaggttgggatctttgatggtcaaaattttaagattagagtaatgcctccaaagtgtttaagatgatcttgttcttatttgcaagt |
129 |
Q |
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| T |
7830548 |
tttgcttcgtggtttaggttgggatctttgatggtcaaaattttaagattagagtaatgcctccaaagtgtttaagatgatcttgctcttatttgcaagt |
7830449 |
T |
|
| Q |
130 |
taatttgtctaccctagattcgtccctgcactgcaacccctcttagctcggtatctagatccactactgaatttgtttattgtgcgacaaatttgtttga |
229 |
Q |
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| T |
7830448 |
taatttgtctcccctagattcgtccctgcactgcaacccctcttagctcggtatctagatccactactgaatctgtttattgtgcgacaaatttgtttga |
7830349 |
T |
|
| Q |
230 |
agacccaaattctaataataatttttaagggactaaatttttaagattaatcagtattttgaagtgtttaagacggacctacccacccagatatgtaagt |
329 |
Q |
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| T |
7830348 |
agacccaaattctaataataatttttaagggcctaaatttttaagattaatcagtattttgaagtgtttaagacggaccta----cccagatatgtaagt |
7830253 |
T |
|
| Q |
330 |
taataaagtgcttacaaaagaagatatacgtctgtatttgttcttcttattatagaatcagaacaaatttcttacaccaactagaatgcaataatagata |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7830252 |
taataaagtgcttacaaaagaagatatacgtctgtatttgttcttcttattatagaatcagaacaaatttcttacaccaactagaatgcaataatagata |
7830153 |
T |
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| Q |
430 |
tccttattaggcataatccagagtggaaagcttgatattgtaatgatactaagatatctctannnnnnnacaatcacctaaactcaaacacgtctcttct |
529 |
Q |
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|||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7830152 |
tccttattagccataatcctgagtggaaagcttgatattctaatgatactaagatatctctatttttttacaatcacctaaactcaaacacgtctcttct |
7830053 |
T |
|
| Q |
530 |
cattagcctcaagtgcataatgattgccacatacct |
565 |
Q |
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| T |
7830052 |
cattagcctcaagtgcataatgattgccacatacct |
7830017 |
T |
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