View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_82 (Length: 273)
Name: NF0857_low_82
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 48693236 - 48693014
Alignment:
| Q |
22 |
atgaaaaacctcaggtgttgttgaataaacaataatacaaacaagccaaattatttatatccgatgatgtttgttgcactttctgtttctttcccaaaaa |
121 |
Q |
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| T |
48693236 |
atgaaaaacctcaggtgttgttgaataaacaataatacaaacaagccaaattatttatatccgatgatgtttgttgcactttctgtttctttcccaaaaa |
48693137 |
T |
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| Q |
122 |
gaaaaacatgttcaaccaatcatggaattgtggaaagagaaaatggatgtttgtggaaagaatgaagtttttaaatacagagaaagccattgctgttccc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48693136 |
gaaaaacatgttcaaccaatcatggaattgtggaaagagaaaatggatgtttgtggaaagaatgaattttttaaatacagagaaagccattgctgttccc |
48693037 |
T |
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| Q |
222 |
ctcgcatttcaaagtgaacccac |
244 |
Q |
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| T |
48693036 |
ctcgcatttcaaagtgaacccac |
48693014 |
T |
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