View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_9 (Length: 576)
Name: NF0857_low_9
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 29 - 567
Target Start/End: Original strand, 31167331 - 31167869
Alignment:
| Q |
29 |
agtctctatcaaactatctttgatttctaaccgaaatgcagaaaggtacaatgaaatcaatgtttttattgcnnnnnnnnnnnaattgatattcattgat |
128 |
Q |
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| T |
31167331 |
agtctctatcaaactatctttgatttctaatcgaaatgcagaaaggtacaatgaaatcaatgtttttattgctttttttttttaattgatattcattgat |
31167430 |
T |
|
| Q |
129 |
gttgttatacatattagtcatgcaaagtaattaaagtatatgatatatgatttcatttctcagattataatggcaagcctagtgtcacacagatcgtggt |
228 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31167431 |
gttgttatacatattagtcatgcaaagtaattaaactatatgatatatgatttcatttctcagattataatggcaagcctagtgtcacacagatcgtggt |
31167530 |
T |
|
| Q |
229 |
ggcctcttccattgggttgataattgctgcagcaatgcattatcgcctaaaaaagttaaggggtcgaaagatcatcccacttgtgagattatcaaagact |
328 |
Q |
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| T |
31167531 |
ggcctcttccattgggttgataattgctgcagcaatgcattatcgcctaaaaaagttaagaggtcgaaagatcatcccacttgtgagattatcaaagact |
31167630 |
T |
|
| Q |
329 |
ggccaaagtcctaagcttgagagattctctcattatgtaggtacgtatttatttttgagatttctttcaaatggatctatgatataatgtatcatctcaa |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31167631 |
ggccaaagtcctaagcttgagagattctctcattatgtaggtacgtatttatttttgagatttctttcaaatggatctatgatataatgtatcatctcaa |
31167730 |
T |
|
| Q |
429 |
ggtgaatcatatatataaatgtatgatactagtgtctagaactcgtacacaggagaaaatcgtggtataatatatgttagttaagatttataatttgttg |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31167731 |
ggtgaatcatatatataaatgtatgatactagtgtctagaactcgtacacaggagaaaatcgtggtataatatatgttagttacgatttataatttgttg |
31167830 |
T |
|
| Q |
529 |
cgtttaattattgagaagcaacaacgtacactttcatct |
567 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
31167831 |
cgtttaattattgagaagcaacaacgtacacattcatct |
31167869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 40179117 - 40179063
Alignment:
| Q |
500 |
atatgttagttaagatttataatttgttgcgtttaattattgagaagcaacaacg |
554 |
Q |
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|||||||||||| |||||||||||| ||| ||||| |||||||| |||| ||||| |
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|
| T |
40179117 |
atatgttagttatgatttataatttcttgagtttagttattgagcagcatcaacg |
40179063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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