View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_90 (Length: 262)
Name: NF0857_low_90
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 41664071 - 41664306
Alignment:
| Q |
15 |
aagtcatatttaatacatgatagatagttgtggagaataaattcaagagtcgtgcatgtagttggttgatggtgttcttcgtgattgcggatgtagttgg |
114 |
Q |
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| T |
41664071 |
aagtcatatttaatacatgatag----ttgtggagaataagttcaagagtcgtgcatgtagttggttggtggtgttcttcgtgattggggatgtagttgg |
41664166 |
T |
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| Q |
115 |
ttgttgg-tgtttcttagtgattgatatgcatgattacaaaagatatatttaatacatgacaacttgggaaaatcaatcgtgtgtgatttatctagtaat |
213 |
Q |
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| T |
41664167 |
ttgttgggtgtttcttagtgattgatatgcatgattacaaaagacatatttaatacatgacaacttgggaaaatcaatcgtgtgtgatttatctagtaat |
41664266 |
T |
|
| Q |
214 |
caaaatatattttttaatttatatttcataatatattatt |
253 |
Q |
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| T |
41664267 |
caaaatatattttttaatttatatttgataatatattatt |
41664306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 29001602 - 29001431
Alignment:
| Q |
45 |
tggagaataaattcaagagtcgtgcatgtagttggttgatggtgttcttcgtgattgc---ggatgtagttggttgttggtgtttcttagtgattgatat |
141 |
Q |
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| T |
29001602 |
tggagaatatattcaagagtcatgcatgtagttagtcactggtattgtttgtgactgatatgtatgtagttggttgtttatgtttcttggtgattgatat |
29001503 |
T |
|
| Q |
142 |
gcatgattacaaaagatatatttaatacatgacaacttgggaaaatcaatcgtgtgtgatttatctagtaat |
213 |
Q |
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| T |
29001502 |
acatgactacaagagtcgtatttaatataagtaaaagtgagaaaatcaattgtgtatgatttatctaataat |
29001431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 33431494 - 33431449
Alignment:
| Q |
105 |
atgtagttggttgttggtgtttcttagtgattgatatgcatgatta |
150 |
Q |
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| T |
33431494 |
atgtagttggttgtttgtgtttctcggtgattgatatgcatgatta |
33431449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 52281456 - 52281520
Alignment:
| Q |
186 |
atcaatcgtgtgtgatttatctagtaatcaaaatatattttttaatttatatttcataatatatta |
251 |
Q |
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| T |
52281456 |
atcaatcgtgtgtgatttatctaat-atcaaaaattattttttaatttaaacttaataatatatta |
52281520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 43518685 - 43518563
Alignment:
| Q |
55 |
attcaagagtcgtgcatgtagttggttgat-ggtgttcttcgtgattgc---ggatgtagttggttgttggtgtttcttagtgattgatatgcatgatta |
150 |
Q |
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||||||||||| ||||||||| ||||||| ||||||||| |||||| | || |||||||||||||||||| || | |||||||||||||||| |
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| T |
43518685 |
attcaagagtcatgcatgtagctggttgagaggtgttcttagtgattattatgcatatagttggttgttggtgttcttttgggattgatatgcatgatac |
43518586 |
T |
|
| Q |
151 |
caaaagatatatttaatacatga |
173 |
Q |
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| T |
43518585 |
caagatacatatttaatacatga |
43518563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 18443914 - 18443866
Alignment:
| Q |
125 |
ttcttagtgattgatatgcatgattacaaaagatatatttaatacatga |
173 |
Q |
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| T |
18443914 |
ttcttagtgattgatatacatgacttcaaaagtcatatttaatacatga |
18443866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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