View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_low_94 (Length: 260)
Name: NF0857_low_94
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 47350751 - 47350604
Alignment:
| Q |
10 |
agctgagaatgaaaggcattttcattggagctgggattcatgagctacgcttagctgaagttagtatgatggctcttgaagaaaccactctcttccaaca |
109 |
Q |
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| T |
47350751 |
agctgagaatgaaaggcattttcattggagctgggattcatgagctacgcttagctgaagttagtatgatggctcttgaagaaaccactctcttccaaca |
47350652 |
T |
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| Q |
110 |
ttgttttagttgaaggtcacagtttgttcattttttaacgtcccatta |
157 |
Q |
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| T |
47350651 |
ttgttttagttgaaggtcacagtttgttcattttttaacgtcccatta |
47350604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 47350230 - 47350160
Alignment:
| Q |
166 |
ctacaatgtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggt |
236 |
Q |
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| T |
47350230 |
ctacaatgtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggt |
47350160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 3818669 - 3818719
Alignment:
| Q |
182 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgt |
232 |
Q |
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| T |
3818669 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgt |
3818719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 47339208 - 47339158
Alignment:
| Q |
182 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgt |
232 |
Q |
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| T |
47339208 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgt |
47339158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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