View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0858_high_3 (Length: 502)

Name: NF0858_high_3
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0858_high_3
NF0858_high_3
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-431)||(200042-200464)
[»] chr4 (12 HSPs)
chr4 (2-431)||(28948426-28948847)
chr4 (1-431)||(22990634-22991047)
chr4 (30-431)||(22703070-22703454)
chr4 (304-426)||(22698733-22698848)
chr4 (304-426)||(22981682-22981797)
chr4 (304-426)||(22995269-22995384)
chr4 (300-383)||(56560508-56560591)
chr4 (300-383)||(24036214-24036297)
chr4 (300-384)||(16565539-16565623)
chr4 (300-384)||(15618844-15618928)
chr4 (1-35)||(22714557-22714591)
chr4 (334-379)||(52056997-52057042)
[»] chr8 (6 HSPs)
chr8 (304-426)||(19648194-19648309)
chr8 (300-383)||(193387-193470)
chr8 (300-383)||(720991-721074)
chr8 (300-383)||(882098-882181)
chr8 (300-383)||(30983223-30983306)
chr8 (300-383)||(44240122-44240205)
[»] chr1 (6 HSPs)
chr1 (304-426)||(4345989-4346104)
chr1 (300-383)||(46407488-46407571)
chr1 (300-383)||(50978939-50979022)
chr1 (307-383)||(35606336-35606412)
chr1 (300-384)||(35569906-35569990)
chr1 (342-382)||(50979027-50979067)
[»] chr5 (5 HSPs)
chr5 (304-426)||(22809984-22810099)
chr5 (300-383)||(33232457-33232540)
chr5 (300-383)||(7072032-7072115)
chr5 (300-384)||(22481515-22481599)
chr5 (197-243)||(22808657-22808703)
[»] chr3 (4 HSPs)
chr3 (304-422)||(7011653-7011764)
chr3 (300-383)||(51125383-51125466)
chr3 (300-383)||(52692542-52692625)
chr3 (327-384)||(16246819-16246876)
[»] chr2 (6 HSPs)
chr2 (304-426)||(23360942-23361058)
chr2 (300-383)||(13895999-13896082)
chr2 (300-383)||(14036616-14036699)
chr2 (300-383)||(14380107-14380190)
chr2 (300-384)||(5916944-5917028)
chr2 (300-384)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (300-383)||(21515703-21515786)
chr6 (300-383)||(30019220-30019303)
chr6 (300-384)||(16547456-16547540)
chr6 (307-385)||(17830767-17830845)
[»] chr7 (3 HSPs)
chr7 (300-385)||(37638703-37638788)
chr7 (300-385)||(10372714-10372799)
chr7 (339-384)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (307-378)||(6607-6678)


Alignment Details
Target: scaffold0009 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 200464 - 200042
Alignment:
Q  1 caatgccatgatttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  200464 caatgccatgatttcttatgttttttgtaacattcaaagcatgtttcttatggttttgcggctggtttggttgcagcttcaggtgctgttcctggcctgc 200365  T
Q  101 taacctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgtt 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||        |||||    
T  200364 taacctgctacggctgggggtagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctagactttctaggcttttttt-atgtt 200266  T
Q  201 aactggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  200265 aactggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaat 200166  T
Q  301 aatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgc 400  Q
    ||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  200165 aatgaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgc 200073  T
Q  401 atgcctaaattcacaattaagacacaggttc 431  Q
    ||||||||||||||||||| |||||||||||    
T  200072 atgcctaaattcacaattatgacacaggttc 200042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 2 - 431
Target Start/End: Complemental strand, 28948847 - 28948426
Alignment:
Q  2 aatgccatgatttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgct 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  28948847 aatgccatgatttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcagctgctgttcctggcctgct 28948748  T
Q  102 aacctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgtta 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||         ||||||    
T  28948747 aacctgctacggttgggggtagttttttggccaagggcctggttggttttgtttgtctctgtaattgctttctagactttctagg-atttttttatgtta 28948649  T
Q  202 actggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagta 301  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28948648 actggactgcctcttccttctggtgtttcggtttgcaaacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaata 28948549  T
Q  302 atgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgca 401  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  28948548 atgaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgca 28948456  T
Q  402 tgcctaaattcacaattaagacacaggttc 431  Q
    ||||||||||||||||||||||||||||||    
T  28948455 tgcctaaattcacaattaagacacaggttc 28948426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 22990634 - 22991047
Alignment:
Q  1 caatgccatgatttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22990634 caatgccatgatttcttatgttttttgtaacattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgc 22990733  T
Q  101 taacctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgtt 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |            |||||    
T  22990734 taacctgctacggctgggggtagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgtt 22990823  T
Q  201 aactggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22990824 aactggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaat 22990923  T
Q  301 aatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgc 400  Q
    ||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  22990924 aatgaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgc 22991016  T
Q  401 atgcctaaattcacaattaagacacaggttc 431  Q
    ||||||||||||||||||| |||||||||||    
T  22991017 atgcctaaattcacaattatgacacaggttc 22991047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 22703454 - 22703070
Alignment:
Q  30 acattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703454 acattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt 22703355  T
Q  130 ggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgcctcttccttctggtgttt 229  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |            ||||||||||||||||||||||||||||||||||    
T  22703354 ggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgttaactggactgcctcttccttctggtgttt 22703265  T
Q  230 cggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattattatcacttaag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||    
T  22703264 cggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattattatcactcaag 22703165  T
Q  330 tgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaagacacaggt 429  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||    
T  22703164 tttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcctaaattcacaattatgacacaggt 22703072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 22698733 - 22698848
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 403  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22698733 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22698825  T
Q  404 cctaaattcacaattaagacaca 426  Q
    |||||||||||||||||||||||    
T  22698826 cctaaattcacaattaagacaca 22698848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 22981797 - 22981682
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 403  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22981797 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22981705  T
Q  404 cctaaattcacaattaagacaca 426  Q
    |||||||||||||||||||||||    
T  22981704 cctaaattcacaattaagacaca 22981682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 22995384 - 22995269
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 403  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22995384 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22995292  T
Q  404 cctaaattcacaattaagacaca 426  Q
    |||||||||||||||||||||||    
T  22995291 cctaaattcacaattaagacaca 22995269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 56560508 - 56560591
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  56560508 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 56560591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 24036297 - 24036214
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24036297 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 24036214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 16565539 - 16565623
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| ||| | ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16565539 taatgaagtaatcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 15618844 - 15618928
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| ||||| ||||| ||||||| |||| || | |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  15618844 taatgaagtattcaattactatcactcaagtttaggatgcacaattgaaaaaacttttggggtatggaagaatagatttgcaatt 15618928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22714591 - 22714557
Alignment:
Q  1 caatgccatgatttcttatgttttttgtgacattc 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  22714591 caatgccatgatttcttatgttttttgtaacattc 22714557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 52057042 - 52056997
Alignment:
Q  334 aggtgcacaatagaaagaacttttggtgtatggaagaatagatttg 379  Q
    |||||||||||||||| ||||||| | ||||||||||| |||||||    
T  52057042 aggtgcacaatagaaataacttttagggtatggaagaacagatttg 52056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 19648194 - 19648309
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 403  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  19648194 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 19648286  T
Q  404 cctaaattcacaattaagacaca 426  Q
    |||||||||||||||||||||||    
T  19648287 cctaaattcacaattaagacaca 19648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 193387 - 193470
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  193387 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 193470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 720991 - 721074
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  720991 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 882098 - 882181
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  882098 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 30983306 - 30983223
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30983306 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 30983223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 44240122 - 44240205
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| |||| |||| | ||||||||||||||||||||| ||||||||||| | |||||||||    
T  44240122 taatgaagtatttaattattatcactcaagtttaagatacacaatagaaagaacttttggggtatggaagaacatatttgcaat 44240205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 4345989 - 4346104
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 403  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  4345989 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 4346081  T
Q  404 cctaaattcacaattaagacaca 426  Q
    |||||||||||||||||||||||    
T  4346082 cctaaattcacaattaagacaca 4346104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 46407488 - 46407571
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  46407488 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 46407571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 50979022 - 50978939
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  50979022 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 50978939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 35606336 - 35606412
Alignment:
Q  307 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  35606336 gtatttaattattatcactcaagtttaaggtgcacaatagaaagaactgttggggtatggaagaacagatttgcaat 35606412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 35569990 - 35569906
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  35569990 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaataaatttgcaatt 35569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 50979067 - 50979027
Alignment:
Q  342 aatagaaagaacttttggtgtatggaagaatagatttgcaa 382  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  50979067 aatagaaagaacttttggggtatggaagaacagatttgcaa 50979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 22809984 - 22810099
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 403  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22809984 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22810076  T
Q  404 cctaaattcacaattaagacaca 426  Q
     ||||||||||||||||||||||    
T  22810077 actaaattcacaattaagacaca 22810099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 33232457 - 33232540
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33232457 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 33232540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 7072115 - 7072032
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  7072115 taatgaagtatttaattattatcactcaaatttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 7072032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 22481515 - 22481599
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22481515 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 22481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 22808657 - 22808703
Alignment:
Q  197 tgttaactggactgcctcttccttctggtgtttcggtttgcagacat 243  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  22808657 tgttaattggactgcctcttccttctggtgtttcggtctgcagacat 22808703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 304 - 422
Target Start/End: Original strand, 7011653 - 7011764
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 403  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  7011653 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 7011745  T
Q  404 cctaaattcacaattaaga 422  Q
    |||||||||||||||||||    
T  7011746 cctaaattcacaattaaga 7011764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 51125466 - 51125383
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  51125466 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 51125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 52692542 - 52692625
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  52692542 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 52692625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 16246876 - 16246819
Alignment:
Q  327 aagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||| |||| |||||||| ||||||||||||   | ||||||||||||||||||||||    
T  16246876 aagtttaagatgcacaattgaaagaacttttaaggcatggaagaatagatttgcaatt 16246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 23361058 - 23360942
Alignment:
Q  304 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaac-ttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 402  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||       |||||||||||||||||||||    
T  23361058 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaactttttggtgtatgaaagaatag-------atttgcaattctacgacgcat 23360966  T
Q  403 gcctaaattcacaattaagacaca 426  Q
    | ||||||||||||||||||||||    
T  23360965 gactaaattcacaattaagacaca 23360942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 13895999 - 13896082
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13895999 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 13896082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 14036616 - 14036699
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14036616 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14036699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 14380107 - 14380190
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14380107 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14380190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 5917028 - 5916944
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5917028 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 5916944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 36311597 - 36311681
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36311597 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 36311681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 21515786 - 21515703
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  21515786 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 21515703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 30019220 - 30019303
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 383  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  30019220 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 30019303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 16547456 - 16547540
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16547456 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16547540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 385
Target Start/End: Complemental strand, 17830845 - 17830767
Alignment:
Q  307 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 385  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17830845 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 17830767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 37638703 - 37638788
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 385  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37638703 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggtgtatggaagaatagatttgcaattt 37638788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 10372799 - 10372714
Alignment:
Q  300 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 385  Q
    |||||| |||||  |||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  10372799 taatgaagtattcgattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 10372714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 12963342 - 12963387
Alignment:
Q  339 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 384  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  12963342 cacaattgaaagaacttttggggtatggaagaatagatttgcaatt 12963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 6678 - 6607
Alignment:
Q  307 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagattt 378  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  6678 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagattt 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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