View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_high_5 (Length: 387)
Name: NF0858_high_5
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 137 - 359
Target Start/End: Complemental strand, 2662228 - 2662006
Alignment:
| Q |
137 |
attaccttaaatgataccatattgaacaaagaaaccaaccctcctgaggttgataagagataagaatctgcttttgatatagcaaaacaagaaactaaat |
236 |
Q |
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| T |
2662228 |
attaccttaaatgataccatattgaacaaagaaaccaaccctcctgaggttgataagagataagaatctgcttttgatatagcaaaacaagaaactaaat |
2662129 |
T |
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| Q |
237 |
cttcacgattggcatttgtaaggtcattgctcatgaattccaaaccatttttggccaattgaggatgaacttgtgttgttgcctacaagcaatagtttat |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2662128 |
cttcacgattggcatttgtaaggtcattgctcatgaattccaaaccatttttggccaattgaggatgaacttgtgctgttgcctacaagcaatagtttat |
2662029 |
T |
|
| Q |
337 |
atattatagcaaaatcaatttcc |
359 |
Q |
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||||||||||||||||||||||| |
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| T |
2662028 |
atattatagcaaaatcaatttcc |
2662006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 38840878 - 38840749
Alignment:
| Q |
11 |
cacagaaagcagttcatcaacaccgatataagccaaacgaggtttcttcatggcagtagcagccaagggtccaagttcaacagcatttatgattccacaa |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840878 |
cacagaaagcagctcatcaacaccgatataagccaaacgaggtttcttcatggcagtagcagccaagggtccaagttcaacagcatttatgattccacaa |
38840779 |
T |
|
| Q |
111 |
ccataatttgcctccaacttagccacatta |
140 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
38840778 |
ccataatttgactccaacttagccacatta |
38840749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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