View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_1 (Length: 745)
Name: NF0858_low_1
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 58 - 719
Target Start/End: Original strand, 660107 - 660780
Alignment:
| Q |
58 |
taatcataatggaaaacaattttcacacctgcattatattgtatcagtgtttgtttttgcaccaaagc----------atagcttttgcttgacttggca |
147 |
Q |
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| T |
660107 |
taatcataatggaaaacaattttcacacctgcattatattgtatcagtgtttgtttttgcaccaaagcaaagggaagcatagcttttgcttgacttggca |
660206 |
T |
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| Q |
148 |
acaacctaatcatatctatagtcaaaattttatacactgatgtgcaatgtgcattagggctttatttgagttgtattttctccacatatattagcacgaa |
247 |
Q |
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| T |
660207 |
acaacctaatcatatctatagtcaaaattttatacactgatgtgcaatgtgcattagggctttatttgagttgtattttctccacatatattagcatgaa |
660306 |
T |
|
| Q |
248 |
tccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataatatacaaaatgcaagaaagag----nn |
343 |
Q |
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| T |
660307 |
tccaagataaatgaaaaactagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataatatacaaaatgcaagaaagagaaaaaa |
660406 |
T |
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| Q |
344 |
nnnnnnntgttcattaatctaattagagatgtttggtcgtgagcttgccaacgttgaattgtgcggcaacaacctccaatcgcgccgccatgaatagaag |
443 |
Q |
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| T |
660407 |
aaaaaaatgttcattaatctaattagagatgtttggtcgtgagcttgc------------------caacaacctccaatcgcgccgccatgaatagaag |
660488 |
T |
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| Q |
444 |
cctgcaccacacgtaacatgggggataaacagaactataacaaatcttccaacatatattaattttgcaaaaatatattcatacttaaattcatgacaga |
543 |
Q |
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| T |
660489 |
cctgcaccacacgtaacatgggggataaacagaactatagcaaatcttccaacatatattaattttgcaaaaatatattcatacttaaattcatgacaga |
660588 |
T |
|
| Q |
544 |
taatcaaggtctaaacaagtaaaccattgtaatatg-----------------acgtaaccaagctttcaacataatcctggacattgaaccaccaagat |
626 |
Q |
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| T |
660589 |
taatcaaggtctaaacaagtaaaccattgtaatatgaacttacattcaacaatacgtaaccaagctttcaacataatcctggacattgaaccaccaagat |
660688 |
T |
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| Q |
627 |
tttttgattctctttacgcttttatctctcctattatagagaattgctgaactttcacaactggttttcaataaatagtgtatcattcatctc |
719 |
Q |
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| T |
660689 |
tttttgattctctttatgcttttatctctccaattatagagaattgctgaactttcacaactggttttcaat-aatagtgtatcattcttctc |
660780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 182 - 341
Target Start/End: Complemental strand, 22071131 - 22070977
Alignment:
| Q |
182 |
cactgatgtgcaatgtgcattagggctttatttgagttgtattttctccacatatattagcacgaatccaagataaatgaaaaaccagttcaagaaatct |
281 |
Q |
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| T |
22071131 |
cactgatgtgca---tgcattagggccatatttaagttgtattttctccacatatattagcatgaatccaagatcaattaaaaaccagtacagaaaattt |
22071035 |
T |
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| Q |
282 |
gagttgaaaccaaataacttcctacctaggcatgaataatatacaaaatgcaagaaagag |
341 |
Q |
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| T |
22071034 |
gagttgaaatcaaataacttcctatcaagggtttaata--atacaaaatgcaagaaagag |
22070977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 210 - 371
Target Start/End: Complemental strand, 22065146 - 22064987
Alignment:
| Q |
210 |
tatttgagttgtattttctccacatatattagcacgaatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcctaccta |
309 |
Q |
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| T |
22065146 |
tatttaagttgtattttctccacatatgtaaacatgaatccaagatcaactaaaaactagttcaagaaatttgagttgaaatcgaataatttccttacta |
22065047 |
T |
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| Q |
310 |
ggcatgaataatatacaaaatgcaagaaagagnnnnnnnnntgttcattaatctaattagag |
371 |
Q |
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| T |
22065046 |
tgcttaaata--ttacaaaatgcaagaaagagcaaaaagaatgttcattaatctaattagag |
22064987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 22071593 - 22071542
Alignment:
| Q |
100 |
atcagtgtttgtttttgcaccaaagcatagcttttgcttgacttggcaacaa |
151 |
Q |
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| T |
22071593 |
atcagtgtttgtttttgcaccaaagcatagcttcagctcgacttggcaacaa |
22071542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 557
Target Start/End: Complemental strand, 22070827 - 22070781
Alignment:
| Q |
511 |
caaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
557 |
Q |
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| T |
22070827 |
caaaaatatattcatacttaaatttaggacagataatcaagctctaa |
22070781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 15963311 - 15963235
Alignment:
| Q |
246 |
aatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataata |
322 |
Q |
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|||||||||| ||| |||||| |||| |||||| |||| ||||||||||||||| | ||| ||||||| ||||||| |
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| T |
15963311 |
aatccaagatgaattaaaaacaagtttaagaaaactgaattgaaaccaaataaccttctatttaggcataaataata |
15963235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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