View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0858_low_11 (Length: 463)

Name: NF0858_low_11
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0858_low_11
NF0858_low_11
[»] chr2 (7 HSPs)
chr2 (14-454)||(40077412-40077852)
chr2 (254-429)||(40059570-40059745)
chr2 (261-450)||(40085464-40085653)
chr2 (31-113)||(38259605-38259687)
chr2 (32-113)||(3973612-3973693)
chr2 (31-75)||(18525159-18525203)
chr2 (31-75)||(22878206-22878250)
[»] chr4 (3 HSPs)
chr4 (337-422)||(22015825-22015910)
chr4 (32-113)||(6428088-6428169)
chr4 (32-72)||(1133039-1133079)
[»] chr8 (1 HSPs)
chr8 (32-84)||(11059648-11059700)
[»] chr7 (4 HSPs)
chr7 (32-71)||(19302482-19302521)
chr7 (33-75)||(7513667-7513709)
chr7 (32-69)||(34036031-34036068)
chr7 (32-72)||(30748953-30748993)
[»] chr1 (2 HSPs)
chr1 (32-75)||(6292600-6292643)
chr1 (32-75)||(12564418-12564461)
[»] chr5 (1 HSPs)
chr5 (34-75)||(8870505-8870546)
[»] chr3 (1 HSPs)
chr3 (32-113)||(50211805-50211886)


Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 40077412 - 40077852
Alignment:
Q  14 gaacatctttttgggacatgtttgaattgacttatctgagcttatgtactgacataagcactactaagactctttgagaaagactatgaaaacaacttat 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40077412 gaacacctttttgggacatgtttgaattgacttatctgagcttatgtactgacataagcacttctaagactctttgagaaagactatgaaaacaacttat 40077511  T
Q  114 ttatataaaagtaatttgatgtatttatgttttgtcaataaaaatagcttatatagaagcacttatatggtataagtgcttaatttaagttgtttatcta 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077512 ttatataaaagtaatttgatttatttatgttttgtcaataaaaatagcttatatagaagcacttatatggtataagtgcttaatttaagttgtttatcta 40077611  T
Q  214 aacatggtcttgatctagtttcgaatgaaaagacatagattaaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgatttt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077612 aacatggtcttgatctagtttcgaatgaaaagacatagattaaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgatttt 40077711  T
Q  314 gatgggaggaaggatttagtgaaatttgtaaaggcagtggctgaggcaggactatatgtgcatctccggatcggtccatacgtgtgtgctgaatggaact 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40077712 gatgggaggaaggatttagtgaaatttgtaaaggcagtggctgaggcaggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaact 40077811  T
Q  414 acgggtaaagtttggtcctttctgtgtattatttttctgtg 454  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40077812 acgggtaaagtttggtcctttctgtgtattatttttctgtg 40077852  T

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Target: chr2; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 254 - 429
Target Start/End: Original strand, 40059570 - 40059745
Alignment:
Q  254 taaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtgg 353  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40059570 taaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtgaaggcagtgg 40059669  T
Q  354 ctgaggcaggactatatgtgcatctccggatcggtccatacgtgtgtgctgaatggaactacgggtaaagtttggt 429  Q
    ||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||    
T  40059670 ctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggt 40059745  T

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Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 261 - 450
Target Start/End: Original strand, 40085464 - 40085653
Alignment:
Q  261 agaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtggctgaggc 360  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||    
T  40085464 agaaagtctatcttaattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggc 40085563  T
Q  361 aggactatatgtgcatctccggatcggtccatacgtgtgtgctgaatggaactacgggtaaagtttggtcctttctgtgtattatttttc 450  Q
    ||| |||||||||||||||||||| |||||||| || ||| ||||||||||||| ||||||||||||||  ||| |||||||||| ||||    
T  40085564 aggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaaagtttggtaatttatgtgtattatatttc 40085653  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 38259605 - 38259687
Alignment:
Q  31 atgtttgaattgacttatctgagcttatgtactgacataagcactactaagactctttgagaaagactatgaaaacaacttat 113  Q
    ||||||||||||| |||| ||| ||||| ||| ||||||| |||| || ||||||||||| | ||  |||| |||||||||||    
T  38259605 atgtttgaattgatttatttgatcttatttacggacataaacacttctgagactctttgaaatagcttatggaaacaacttat 38259687  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 3973693 - 3973612
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagcactactaagactctttgagaaagactatgaaaacaacttat 113  Q
    |||||| ||| |||||| |||||||||  ||||| |||||||||  ||||||| ||||||| ||  |||| |||||||||||    
T  3973693 tgtttggattcacttatttgagcttatccactgatataagcacttataagactgtttgagagagcatatggaaacaacttat 3973612  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 18525159 - 18525203
Alignment:
Q  31 atgtttgaattgacttatctgagcttatgtactgacataagcact 75  Q
    |||||||||||||||||| ||||||||| ||| ||||||| ||||    
T  18525159 atgtttgaattgacttatttgagcttatctacagacataaacact 18525203  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 22878250 - 22878206
Alignment:
Q  31 atgtttgaattgacttatctgagcttatgtactgacataagcact 75  Q
    ||||||| |||||||||| |||||||||  |||||||||||||||    
T  22878250 atgtttggattgacttatttgagcttatccactgacataagcact 22878206  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
Q  337 atttgtaaaggcagtggctgaggcaggactatatgtgcatctccggatcggtccatacgtgtgtgctgaatggaactacgggtaaa 422  Q
    |||||| |||||||| || |  |||||  |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  22015910 atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa 22015825  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 6428169 - 6428088
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagcactactaagactctttgagaaagactatgaaaacaacttat 113  Q
    ||||||||||||||||| ||||||||| || ||  |||||||||  | ||||  ||||||| ||| ||||||||||||||||    
T  6428169 tgtttgaattgacttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaacttat 6428088  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 1133079 - 1133039
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagc 72  Q
    ||||||||||||||||| ||||||||| |||||||| ||||    
T  1133079 tgtttgaattgacttatttgagcttatctactgacacaagc 1133039  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 11059648 - 11059700
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagcactactaagact 84  Q
    ||||||||||||||||| ||||||||| || |||||||||||||  |||||||    
T  11059648 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagact 11059700  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 19302482 - 19302521
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataag 71  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataag 19302521  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 7513709 - 7513667
Alignment:
Q  33 gtttgaattgacttatctgagcttatgtactgacataagcact 75  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagcact 7513667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 34036068 - 34036031
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacata 69  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  34036068 tgtttgaattgacttatttgagcttatctactgacata 34036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 30748953 - 30748993
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagc 72  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  30748953 tgtttgaattgagttatttgagcttatctactgacataagc 30748993  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 6292643 - 6292600
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagcact 75  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcact 6292600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 12564418 - 12564461
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagcact 75  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||    
T  12564418 tgtttgaattgacttatttgagcttatatactgatataagcact 12564461  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 8870505 - 8870546
Alignment:
Q  34 tttgaattgacttatctgagcttatgtactgacataagcact 75  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  8870505 tttgaattgatttatttgagcttatgtactgccataagcact 8870546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 50211886 - 50211805
Alignment:
Q  32 tgtttgaattgacttatctgagcttatgtactgacataagcactactaagactctttgagaaagactatgaaaacaacttat 113  Q
    |||||| ||| |||||| | ||||||| |||| |||||||||||  ||||||| ||||||| |   ||||||||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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