View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_13 (Length: 387)
Name: NF0858_low_13
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 79 - 319
Target Start/End: Complemental strand, 9094131 - 9093887
Alignment:
| Q |
79 |
ttcaaatttga-tgttactctttttaataatttttaataaaaatattataccttctcttnnnnnnntattagatctattttcgttttatatgattataaa |
177 |
Q |
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| T |
9094131 |
ttcaaatttgaatgttactctttttaataatttttaataaaaatattataccttctcttaaaaaaatattagatctattttcgttttttatgattataaa |
9094032 |
T |
|
| Q |
178 |
agttannnnnnnnatcaaaaagaataatatttttagaaatatatttaaatagtacaggattactttaccacaagta---tctttgtacccagacccatat |
274 |
Q |
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| T |
9094031 |
aattattttttttatcaaaaagagtaatatttttagaaatatatttaaatagtacaggattactttaccacaagtatcgtcgtcgtacccagacccatat |
9093932 |
T |
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| Q |
275 |
gccaacggcaaaaagcagtcgggacgaaagcaatgaagttcctcg |
319 |
Q |
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||||||| ||||||||||| |||| | |||| |||||||||||| |
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| T |
9093931 |
gccaacgacaaaaagcagtagggatgggagcattgaagttcctcg |
9093887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 9094164 - 9094126
Alignment:
| Q |
10 |
aagaatattagggagcatcttatctgaatctgattcaaa |
48 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
9094164 |
aagaaaattagggagcatcttatctgaatctgattcaaa |
9094126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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