View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_15 (Length: 288)
Name: NF0858_low_15
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 2211812 - 2212050
Alignment:
| Q |
30 |
gacgggaaggtaaagtcttggttactgtataaatctttaatttttcatttttggaaattttcatgccatagcttgactggtcatggattttgacttattt |
129 |
Q |
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| T |
2211812 |
gacgggaaggtaaagtattggttactgtataaatctttaattttttatttttggaaattttcatgccatagcttgactggtcatggattttgacttattt |
2211911 |
T |
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| Q |
130 |
aaatgctcgcatgttattattacacttaacagcatggcaagtacaagtggcaaacttacaaagaagtatatgacatggtgatcaaagtcggaaattctat |
229 |
Q |
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| T |
2211912 |
aaatgctcgcatgttattattacacttaacagcatggcaagtacaagtggcaaacatacaaagaagtatatgacatggtgatcaaagtcggaaattctat |
2212011 |
T |
|
| Q |
230 |
ccgcagctgtggttatggagaagtaagtcttctgtctct |
268 |
Q |
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| T |
2212012 |
ccgcagctgtggttatggagaagtaagtcttctgtctct |
2212050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 2199152 - 2199374
Alignment:
| Q |
33 |
gggaaggtaaagtcttggttactgtataaatctttaatttttcatttttggaaattttcatgccatagcttgactggtcatggattttgactt-atttaa |
131 |
Q |
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| T |
2199152 |
gggaaggtaaagtcttggttactgtataaatctct----tgtc-tttttggaaatttccttgccatagcttaaccggtcatggattt-gactttatttaa |
2199245 |
T |
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| Q |
132 |
atgctcgcatgttattattacacttaacagcatggcaagtacaagtggcaaacttacaaagaagtatatgacatggtgatcaaagtcggaaattctatcc |
231 |
Q |
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| T |
2199246 |
atgctcacatgttattattacacttaacagcatggcaagtacaagtggcaaacttacaaagaagtatatgacatggtgatcaaagtcggaaattctatcc |
2199345 |
T |
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| Q |
232 |
gcagctgtggttatggagaagtaagtctt |
260 |
Q |
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| T |
2199346 |
gcagctgtggttatggagaagtaagtctt |
2199374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 41933553 - 41933502
Alignment:
| Q |
164 |
tggcaagtacaagtggcaaacttacaaagaagtatatgacatggtgatcaaa |
215 |
Q |
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|||||| | ||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
41933553 |
tggcaaattcaattggcaaacttacaaagaagtgtatgacttggtgatcaaa |
41933502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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