View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_19 (Length: 251)
Name: NF0858_low_19
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47815940 - 47815717
Alignment:
| Q |
1 |
cagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-aaatggacaatatgttgaaaacatattaatacatt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47815940 |
cagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattagaagtaaatggacaatatgttgaaaacatattaatacatt |
47815841 |
T |
|
| Q |
100 |
gagcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgagccaaaccaacaacaatttgtagactagaaatagaaaagnnnnnnnnc |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
47815840 |
gatcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgaaccaaaccaacaacaatttgtagactagaaatagaaaagaaaaaaaac |
47815741 |
T |
|
| Q |
200 |
accaacctgctttccctctatggt |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
47815740 |
accaacctgctttccctctatggt |
47815717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 47380472 - 47380288
Alignment:
| Q |
1 |
cagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-aaatggacaa-tatgttgaaaacatattaatacat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||| |||||||||| ||||||||||||| |
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| T |
47380472 |
cagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggaagtaaatgggcaaatatgttgaaatcatattaatacat |
47380373 |
T |
|
| Q |
99 |
tgagcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgagccaaaccaacaacaatttgtagactagaaatagaaa |
188 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
47380372 |
tgagcaacttgaacatgtttgtggtgctgaaaaagaaagagcaaata-----aaccaaaccaacaacaatttgtaaactagaaatagaaa |
47380288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17717679 - 17717456
Alignment:
| Q |
1 |
cagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-aaatggacaatatgttgaaaacatattaatacatt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17717679 |
cagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattagaagtaaatggacaatatgttgaaaacatattaatacatt |
17717580 |
T |
|
| Q |
100 |
gagcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgagccaaaccaacaacaatttgtagactagaaatagaaaagnnnnnnnnc |
199 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| | |
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|
| T |
17717579 |
gaacaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgaaccaaaccaacaacaaattgtagactagaaataaaaaagaaaaaaaac |
17717480 |
T |
|
| Q |
200 |
accaacctgctttccctctatggt |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
17717479 |
accaacctgctttccctctatggt |
17717456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 34055921 - 34056103
Alignment:
| Q |
9 |
gtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-aaatggacaatatgttgaaaacatattaatacattgagcaact |
107 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| || |||||||| |
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| T |
34055921 |
gtctaaccatcttgatacaagacaattacttcccagtcaaaatgtagtattagaagtaaatggacaatatgttgaaatcatattaataaatggagcaact |
34056020 |
T |
|
| Q |
108 |
tgaacatgtttgcggt---gctgaaaaacaaagagcaaataccctgagccaaaccaacaacaatttgtagactagaaatagaaa |
188 |
Q |
| |
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|||||||||||| ||| |||| |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
34056021 |
tgaacatgtttgtggtggcgctg-aaaagaaagagcagataccctgaatcaaaccaacaacaatttgtagactagaaatagaaa |
34056103 |
T |
|
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