View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_2 (Length: 692)
Name: NF0858_low_2
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 136 - 685
Target Start/End: Original strand, 2385171 - 2385723
Alignment:
| Q |
136 |
caaagctataaacatctgaaggctgtgtagttttcctgctgtctgtaacttctggtgcttggtatccggatcctcgtgagatgggctggacgactgagct |
235 |
Q |
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| T |
2385171 |
caaagctgtaaacatctgaaggctgtgtggctttcctggtgtctgtaacttctggtgctcggtatccggatgctcgtgagatgggctggacgactgagct |
2385270 |
T |
|
| Q |
236 |
cattatggttgccaagtcaagatgagatacacatccgtattgcttagtgttaagaaagatatttgaggatttgacattgccatgtacaagttttccacca |
335 |
Q |
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|||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2385271 |
cattatggttgccaagccaagatcagaaacacacccgtattgcttagtgttaagaaagatatttgaggatttgacattgccatgtacaagttttccacca |
2385370 |
T |
|
| Q |
336 |
ttttcggaatggatacgagcaaggcctcgtgcagcacctaaagctagtttgattcgagtattctaatctaaagccaccctgtcctctcctcttttacctg |
435 |
Q |
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| T |
2385371 |
tttttggaatggatatgagcaaggcctcgtgcagcacctaaagctagtttgatccgagtattccaatctaaagccaccctgtcctctcctcttttacctg |
2385470 |
T |
|
| Q |
436 |
aaattttcaaaaagcaataaggttt----atacatagaaagataatatagttgtaagatgtgtagtatactaaagtaaaatattcaagacagattgtttc |
531 |
Q |
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| T |
2385471 |
aaattttcaaaaagcaataaggtttatacatacatagaaggataatatagttgtaagat-cgtagtatacgaaagtaaaatattcaagacagcttgtttc |
2385569 |
T |
|
| Q |
532 |
cgattatgtaatcatttcgttaatttgatcttgccgcatcatcctataggcatgagtttcgaacttgcttgtcatgcattaatactcttcacagaacagt |
631 |
Q |
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| T |
2385570 |
cgattaagtaatcatttcgtcaatttgatcttgccgaatcatcctataggcattagtttccaccttgcttgtcatgcattaatactcttcacataacagt |
2385669 |
T |
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| Q |
632 |
attcaaatatagaaaataatcatccctctagagaaaaacaaaagatattcttcg |
685 |
Q |
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||||||||||||||||| |||| ||||| ||||| |||||||||||||| |||| |
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| T |
2385670 |
attcaaatatagaaaatgatcagccctccagagagaaacaaaagatatttttcg |
2385723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 2384188 - 2384319
Alignment:
| Q |
8 |
gaacacatacaatgtaatatttcaagtcaaaacaacataggaaaattccagaatctgtaatctaaacaattatgatagaatttcaactttgaaacatatt |
107 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
2384188 |
gaacacatacaatgtaatatttcaagtcaaaaccacataggaaaattcgagaatctgtaatctaaacaattataatagaatttcaactttgaaacatgtt |
2384287 |
T |
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| Q |
108 |
agagtataattgacatacgcaaggattacaaa |
139 |
Q |
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||| ||||| || ||||| ||||||||||||| |
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| T |
2384288 |
agaatataagtgtcatacacaaggattacaaa |
2384319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 136 - 452
Target Start/End: Complemental strand, 41731167 - 41730851
Alignment:
| Q |
136 |
caaagctataaacatctgaaggctgtgtagttttcctgctgtctgtaacttctggtgcttggtatccggatcctcgtgagatgggctggacgactgagct |
235 |
Q |
| |
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||||||| |||||||| |||||||||| | |||||| ||||||||||||| |||||| |||| || | | | ||||||||||| || | | ||| | |
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| T |
41731167 |
caaagctgtaaacatcagaaggctgtgctgctttccttgtgtctgtaacttcaggtgctcggtaaccagctgcacgtgagatgggtagggcaagcgaggt |
41731068 |
T |
|
| Q |
236 |
cattatggttgccaagtcaagatgagatacacatccgtattgcttagtgttaagaaagatatttgaggatttgacattgccatgtacaagttttccacca |
335 |
Q |
| |
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||||||||| | |||||| ||||||||| || ||||| || || || ||||||||||||||||| |||| |||||||| |||||||| || ||| |
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| T |
41731067 |
tgatatggttgctagaccaagatcagatacacaaccatattgtttggtattgagaaagatatttgaggacttgatgttgccatggacaagtttaccgcca |
41730968 |
T |
|
| Q |
336 |
ttttcggaatggatacgagcaaggcctcgtgcagcacctaaagctagtttgattcgagtattctaatctaaagccaccctgtcctctcctcttttacctg |
435 |
Q |
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|| ||| |||||| |||||| ||||| ||| ||||||||||||| | | | ||||||| | ||||||| | |||| |||||||||||||||| |||| |
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| T |
41730967 |
ttctcgacatggatttgagcaatgcctcttgctgcacctaaagctattctcaaccgagtatcccaatctaatggcaccttgtcctctcctcttttccctg |
41730868 |
T |
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| Q |
436 |
aaattttcaaaaagcaa |
452 |
Q |
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||||| ||| ||||||| |
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| T |
41730867 |
aaattctcataaagcaa |
41730851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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