View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0858_low_20 (Length: 251)
Name: NF0858_low_20
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_20 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 9384585 - 9384830
Alignment:
| Q |
6 |
gtccaataatataattctaaaacatgaagctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaattttta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9384585 |
gtccaataatataattctaaaacatgaagctctcgttcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaattttta |
9384684 |
T |
|
| Q |
106 |
ctccacctatgttagcctaatgagctaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatc |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9384685 |
ctccacctatgttagcctaatgagttaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatc |
9384784 |
T |
|
| Q |
206 |
aacattaacattcaatgtctctaacaatctcaatgccctttgacct |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9384785 |
aacattaacattcaatgtctctaacaatctcaatgccctttgacct |
9384830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 31947700 - 31947916
Alignment:
| Q |
35 |
ctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaac |
134 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31947700 |
ctctcattcaaacatggattgaattttactacaagatcattctctcatttacaaaaggacattaatttttactctacctatgttagcctaatgagctaac |
31947799 |
T |
|
| Q |
135 |
atattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaacaatc |
234 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31947800 |
atatttaaacacaacactctattttttaccaaacagctaaatatgcaatctaatctaccttctaaactatcaacattaacattcaatgtctctgacaatc |
31947899 |
T |
|
| Q |
235 |
tcaatgccctttgacct |
251 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
31947900 |
ttaatgccctttgacct |
31947916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 31455655 - 31455574
Alignment:
| Q |
150 |
actctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaaca |
231 |
Q |
| |
|
||||||||| ||| ||||||||| | |||||||| ||||||||||| | | | |||||||||||||||||||||||||| |
|
|
| T |
31455655 |
actctatttcgtactaaacatctataaatgcaatccaatccaccttcaagtccacaaacattaacattcaatgtctctaaca |
31455574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9 times since January 2019
Visitors: 6041