View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_4 (Length: 620)
Name: NF0858_low_4
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_4 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 30 - 620
Target Start/End: Complemental strand, 9385429 - 9384839
Alignment:
| Q |
30 |
gcagagatttacaattgtatggaagaactcttcaactctccacaaactcaacaatctcttctacgttaccaagatggaaaactcatatcagattcattgt |
129 |
Q |
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| T |
9385429 |
gcagagatttacaattgtatggaagaactcttcaactctccacaaactcaacaatctcttctacgttaccaagatggaaaactcatatcagattcattgt |
9385330 |
T |
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| Q |
130 |
gtagctcaatcacattgctagatgcttgtgagtgttcaagggatttattattggttcttagagaacatatacaaacacttcaatcagcaatacgtagaag |
229 |
Q |
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| T |
9385329 |
gtagctcaatcacattgctagatgcttgtgagtgttcaagggatttattattggttcttagagaacatatacaaacacttcaatcagcaatacgtagaag |
9385230 |
T |
|
| Q |
230 |
aagaaaaggtgattcaagcattgaaaacagtgtttcttcttatgaaaatttcagaaagaaggcaaagaagaaaatttcataccaacttttggagctaaag |
329 |
Q |
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| T |
9385229 |
aagaaaaggtgattcaagcattgaaaacagtgtttcttcttatgaaaatttcagaaagaaggcaaggaagaaaatttcataccaacttttggagctaaag |
9385130 |
T |
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| Q |
330 |
aaaatgcagaacaaagttaactcattttctctttgtgatcaagatcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatat |
429 |
Q |
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| T |
9385129 |
aaaatgcagaacaaagttaactcattttctctttgtgatcaagatcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatat |
9385030 |
T |
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| Q |
430 |
ctatattaagttctgtactacnnnnnnnnnctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctctta |
529 |
Q |
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| T |
9385029 |
ctatattaagttctgtactactttttttttctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctctta |
9384930 |
T |
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| Q |
530 |
tgagaaagaagggaagaacaaaaatgatgttgaggatctaaacaatgctttgtgttctcttattggaaaagataaaaatagtgatcattct |
620 |
Q |
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| T |
9384929 |
tgagaaagaagggaagaacaaaaatgaggttgaggatctaaacaatgctttgtgttctcttattggaaaagataaaaatagtgatcattct |
9384839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 273 - 620
Target Start/End: Complemental strand, 31948271 - 31947925
Alignment:
| Q |
273 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaagttaactcattttctctttgtgatcaag |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31948271 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaatttttggagctaaagaaaatgcagagcaaagttaactcattttctctttgtgatcaag |
31948172 |
T |
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| Q |
373 |
atcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgtactacnnnnnnnnnctatgccagcact |
472 |
Q |
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| T |
31948171 |
atcaacaactagcatttttggttagggttttaagagaagtaaacacaatcactatatctatattaagttttgtgctactttttttgtctatgccagcact |
31948072 |
T |
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| Q |
473 |
tggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagaagggaagaacaaaaatgatgttgaggatctaaac |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
31948071 |
tggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaag-agggaagaacaaaaatgaggttgaggatctaaac |
31947973 |
T |
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| Q |
573 |
aatgctttgtgttctcttattggaaaagataaaaatagtgatcattct |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31947972 |
aatgctttgtgttctcttattggaaaagataaaaatagtgattattct |
31947925 |
T |
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