View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_5 (Length: 613)
Name: NF0858_low_5
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_5 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-169; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 71 - 380
Target Start/End: Complemental strand, 31966512 - 31966203
Alignment:
| Q |
71 |
aatccaagagaaatttgctccaatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatgcagca |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966512 |
aatccaagagaaatttgctccaatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatgcagca |
31966413 |
T |
|
| Q |
171 |
gttccatatagttgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaacacaaa |
270 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966412 |
gttccgtatagttgatccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaacacaaa |
31966313 |
T |
|
| Q |
271 |
caatgatattagaaataataaatcaaagaagataaaacataaattggctagtgttgcatagaccaaatacaaagtacaaataaaacatacacaatgcgga |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966312 |
caatgatattagaaataataaatcaaagaagataaaacataaattggctagtgttgcatagaccaaatacaaagtacaaataaaacatacacaatgcgga |
31966213 |
T |
|
| Q |
371 |
catcacaata |
380 |
Q |
| |
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|||||||||| |
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|
| T |
31966212 |
catcacaata |
31966203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 71 - 315
Target Start/End: Complemental strand, 31959522 - 31959281
Alignment:
| Q |
71 |
aatccaagagaaatttgctccaatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatgcagca |
170 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
31959522 |
aatccaagagaaatttgctccaatgtaatatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgctgttatataatatgttgca |
31959423 |
T |
|
| Q |
171 |
gttccatatagttgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaacacaaa |
270 |
Q |
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||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
31959422 |
gttccatatagctgacccaatgaaacggcaaattgaaggatgtagctgtatgatttcccagtagctattgcatatctgtcatacattaagaaaatacaaa |
31959323 |
T |
|
| Q |
271 |
caatgatattagaaataataaatcaaagaagataaaacataaatt |
315 |
Q |
| |
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|| ||| |||| |||| | |||||| ||||||||||||||||| |
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| T |
31959322 |
cagtgagattaaaaatgaaaaatca---aagataaaacataaatt |
31959281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 453 - 562
Target Start/End: Complemental strand, 31966204 - 31966095
Alignment:
| Q |
453 |
taaggagtttaatttacacggccagaagactagctggaccctccaaaactgttgttagtccttcaacagtttcgatcactgcatcccttgcagcatacct |
552 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31966204 |
taaggagtttaatttacacggtcagaagactagctggaccctccaaaactgttgttagtccttcaacagtttcgatcggtgcatcccttgcagcatacct |
31966105 |
T |
|
| Q |
553 |
tgaatctctg |
562 |
Q |
| |
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|||||||||| |
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| T |
31966104 |
tgaatctctg |
31966095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 459 - 560
Target Start/End: Complemental strand, 31958890 - 31958789
Alignment:
| Q |
459 |
gtttaatttacacggccagaagactagctggaccctccaaaactgttgttagtccttcaacagtttcgatcactgcatcccttgcagcataccttgaatc |
558 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| | | | | | ||||||||||| |||||||||||||| |
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| T |
31958890 |
gtttaacttacacggccagaagactggctgggccctccaaaactgctgttagtccttcaacagctactaccgcagcatcccttgctgcataccttgaatc |
31958791 |
T |
|
| Q |
559 |
tc |
560 |
Q |
| |
|
|| |
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|
| T |
31958790 |
tc |
31958789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 20981688 - 20981811
Alignment:
| Q |
183 |
tgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaacaatgatatta |
281 |
Q |
| |
|
|||||||| |||| ||||| ||||||||| || || |||||||||| |||||||||||||||| |||||| ||| ||||||||||||||| ||| |||| |
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|
| T |
20981688 |
tgacccaaagaaatggcaagttgaagtatgtaactctatgatttcctagtagctattgcatatttgtcatccatattagaaaacacaaactgtgagatta |
20981787 |
T |
|
| Q |
282 |
gaaataataaatcaaagaagataa |
305 |
Q |
| |
|
|||| |||| ||||||||||||| |
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| T |
20981788 |
aaaatgataattcaaagaagataa |
20981811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 20971281 - 20971348
Alignment:
| Q |
185 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcat |
252 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||| |
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| T |
20971281 |
acccaaagaaacggcaaattgaagtatgtatatgtatgatttcctagtagctattgcatatttgtcat |
20971348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 20973509 - 20973566
Alignment:
| Q |
183 |
tgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattg |
240 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
20973509 |
tgacccaaagaaacaacaaattgaagtatgtagctgtatgatttcctagtagctattg |
20973566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 30457 - 30371
Alignment:
| Q |
185 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaa |
270 |
Q |
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|
|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| ||||| |
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| T |
30457 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaaaacaaa |
30371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 41403878 - 41403964
Alignment:
| Q |
185 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaa |
270 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| ||||| |
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|
| T |
41403878 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaaaacaaa |
41403964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 7135 - 7215
Alignment:
| Q |
185 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaa |
264 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| |
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|
| T |
7135 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaa |
7215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 13445892 - 13445768
Alignment:
| Q |
197 |
ggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaacaatgatatta-----gaaataata |
290 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||| ||| |||||||||| || || || ||||||||||||||||| |||| |||| |||| |
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|
| T |
13445892 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaatgaaagaata |
13445793 |
T |
|
| Q |
291 |
aatcaaagaagataaaacataaatt |
315 |
Q |
| |
|
||| |||| |||||||||||||||| |
|
|
| T |
13445792 |
aataaaagtagataaaacataaatt |
13445768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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