View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0858_low_6 (Length: 585)

Name: NF0858_low_6
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0858_low_6
NF0858_low_6
[»] chr2 (1 HSPs)
chr2 (1-572)||(15420377-15420946)
[»] chr1 (2 HSPs)
chr1 (328-391)||(14599147-14599210)
chr1 (328-383)||(14609304-14609359)


Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 15420946 - 15420377
Alignment:
Q  1 ggtggcaagccaccacaaggaggggcgaagtttacacgccggacatcaagcggacgagtagtgagtctatcaagagatgatgacatggatatgtccgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15420946 ggtggcaagccaccacaaggaggggcgaagtttacacgccggacatcaagcggacgagtagtgagtctatcaagagatgatgacatggatatgtccggtg 15420847  T
Q  101 aatttgccggccaaaatgattatatcaattacacagttatgatgccaccaacaccagataatcagcccggaacatctgattcaaagcaagggactacaag 200  Q
    | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15420846 agtttgctggccaaaatgattatatcaattacaccgttatgatgccaccaacaccagataatcagcccggaacatctgattcaaagcaagggactacaag 15420747  T
Q  201 atttgcctcggatactcaacaaggaaggggtgctggcggaggtggtgcatctaaaatggatagaagaatgtcggtgttgagctcggaaaataataagtct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15420746 atttgcctcggatactcaacaaggaaggggtgctggcggaggtggtgcatctaaaatggatagaagaatgtcggtgttgagctcggaaaataataagtct 15420647  T
Q  301 atgttattaaggagccaaactcaagattttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggcaagatgatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15420646 atgttattaaggagccaaactcaagattttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggcaagatgatc 15420547  T
Q  401 caaattcttttggagatgaatgtgaaatgagcatgtcagattttatggacaaaccttggaaaccattaactagaaaagttcaaattccaggcgctatact 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15420546 caaattcttttggagatgaatgtgaaatgagcatgtcagattttatggacaaaccttggaaaccattaactagaaaagttcaaattccaggcgctatact 15420447  T
Q  501 cagtccttataggtacctttcttaattatggtatatagtttttgttgcaatatgtataaaggttatatgtct 572  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||  | ||||||||||||||||    
T  15420446 cagtccttataggtacctttcttaattatgctatatagtttttgttacaata--tttaaaggttatatgtct 15420377  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 14599210 - 14599147
Alignment:
Q  328 tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggc 391  Q
    |||||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||||||| |||||    
T  14599210 tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggc 14599147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 14609304 - 14609359
Alignment:
Q  328 tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgc 383  Q
    |||||||| |||| ||||||||||||||| ||||| ||||||||| |||| |||||    
T  14609304 tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgc 14609359  T

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