View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_8 (Length: 562)
Name: NF0858_low_8
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 217 - 420
Target Start/End: Complemental strand, 52053667 - 52053464
Alignment:
| Q |
217 |
ttggatccctccatggagacacatatccacttcaacaacaacacatgtacagtagtgggaaaaagtgggaacaaaacaattcaagtgaaactagaaaacc |
316 |
Q |
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| T |
52053667 |
ttggatccctccatggagacacatatccacttcaacaacaacacatgtacagtagtgggaaaaagtgggaacaaaacaattcaagtgaaactagaaaacc |
52053568 |
T |
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| Q |
317 |
ttacagaaaatatgaatgaactactagagtctagtactagtactacattattattgaccttagattcaattaaaaggaacccatccataattgaaatcca |
416 |
Q |
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| T |
52053567 |
ttacagaaaatatgaatgaactactagagtctagtactagtactacattattattgaccttagattcaattaaaaggaacccatccataattgaaatcca |
52053468 |
T |
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| Q |
417 |
agct |
420 |
Q |
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|||| |
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| T |
52053467 |
agct |
52053464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 52053874 - 52053733
Alignment:
| Q |
10 |
aacaatatcccaggggccatcataatgctagcatccaataatgtactcatcgcatacgtgtgtgatgtgtctttgaatataagctgaaacagacacggcc |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52053874 |
aacaaaatcccaggggccatcataatgctagcatccaataatgtactcaacacatacgtgtgtgatgtgtctttgaatataagctgaaacagacacggcc |
52053775 |
T |
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| Q |
110 |
aaataactggtagagtctgaaaactgaaaccatgtttggcag |
151 |
Q |
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| T |
52053774 |
aaataactggtagagtctgaaaactgaaatcatgtttggcag |
52053733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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