View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0858_low_9 (Length: 512)
Name: NF0858_low_9
Description: NF0858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0858_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Original strand, 52861518 - 52861985
Alignment:
| Q |
30 |
aaaagtttgaaggagttatctcttggcggtaactattttactggttcaattccaaaaagttatggaatgcttaatgagttagagattttggatttaagca |
129 |
Q |
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| T |
52861518 |
aaaagtttgaaggagttatctcttggtggtaactattttactggttcaattccaaaaagttatggaatgcttaatgagttagagattttggatttaagca |
52861617 |
T |
|
| Q |
130 |
acaataaattgaatgggattttgctttcggaaatcatgcagttaggtaacatgagtgttttgaatctcagcaataatagattctccggtcaagtttcgtt |
229 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52861618 |
acaataaattgaatgggattttgccttcggaaatcatgcagttaggtaacatgagtgttttgaatctcagcaataatagattctccagtcaagtttcgtt |
52861717 |
T |
|
| Q |
230 |
tcaaattggagacttgaccgctttgcaggttcttaatttgagtcactgtggcttttctggtagtgttccagctacattggggaatttgatgaaactgaga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52861718 |
tcaaattggagacttgaccgctttgcaggttcttaatttgagtcactgtggcttttctggtagtgttccagctacattggggaatttgatgaaactgaga |
52861817 |
T |
|
| Q |
330 |
gtgttggatttaagcaaacaaaatctttcaggtgagttacctgttgaggtttttggtttacctagtttggaagttgtggcacttgatgaaaaccatttga |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52861818 |
gtgttggatttaagcaaacaaaatctttcaggtgagttacctgttgaggtttttggtttacctagtttggaagttgtggcacttgatgaaaaccatttga |
52861917 |
T |
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| Q |
430 |
atggttctgttcctgagggtttcagcagcattgttagtctaaagtatcttaatctgagttccaatgat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52861918 |
atggttctgttcctgagggtttcagcagcattgttagtctaaagtatcttaatctgagttccaatgat |
52861985 |
T |
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