View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0859_high_10 (Length: 449)
Name: NF0859_high_10
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 30 - 428
Target Start/End: Complemental strand, 43262909 - 43262511
Alignment:
| Q |
30 |
gatactgcaaacaacgaagaaatctagaaacttctctggcctctacctttttccacgttcagtaatgaacttgagagcgaaacttgagaattgagcaagg |
129 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43262909 |
gatactgctaacaacgaagaaatctagaaacttctctggcctctacctttttccacgttcagtaatgaacttgagagcgaaacttgagaattgagcaagg |
43262810 |
T |
|
| Q |
130 |
gnnnnnnncatcttcaacatagaacgacccttaataattccctctctcgcgcctcttgcggttcttgccgccgcaagtgcacccgagtcaggctcagttt |
229 |
Q |
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| T |
43262809 |
gagaaaaacatcttcaacatagaacgacccttaataattccctctctcgcgcctcttgcggttcttgccgccgcaagtgcacccgagtcaggctcagttt |
43262710 |
T |
|
| Q |
230 |
tgggacgttgttcgattccctgcaatgaagctaaatataaccaaatgaacaacattttttgacaccatagttctaaattgcattctacagtcgcaattac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43262709 |
tgggacgttgttcgattccctgcaatgaagctaaatataaccaaatgaacaacattttttgacaccatagttctaaattgcattctacagtcgcaattac |
43262610 |
T |
|
| Q |
330 |
ggcaacattataatagtgttataggtcatcacatttgcaaccgcaattggcaattgtagctgcatcagctgcatttactaatattttaccagtataatc |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43262609 |
ggcaacattataatagtgttataggtcatcacatttgcaaccgcaattggcaattgtagctgcatcagctgcatttactaatattttaccagtgtaatc |
43262511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 2620635 - 2620600
Alignment:
| Q |
293 |
accatagttctaaattgcattctacagtcgcaatta |
328 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
2620635 |
accatagttctaaattgcactctacagtcgcaatta |
2620600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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