View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0859_high_12 (Length: 431)

Name: NF0859_high_12
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0859_high_12
NF0859_high_12
[»] chr3 (2 HSPs)
chr3 (16-228)||(22759317-22759529)
chr3 (269-364)||(22759570-22759665)
[»] chr2 (2 HSPs)
chr2 (11-228)||(1691685-1691902)
chr2 (269-364)||(1691942-1692037)
[»] chr5 (5 HSPs)
chr5 (11-226)||(38041749-38041964)
chr5 (11-228)||(2367109-2367326)
chr5 (269-364)||(2085301-2085396)
chr5 (271-364)||(2367368-2367461)
chr5 (86-225)||(2085122-2085256)
[»] chr1 (5 HSPs)
chr1 (11-228)||(23909974-23910191)
chr1 (11-154)||(34266147-34266290)
chr1 (272-364)||(23910235-23910327)
chr1 (269-364)||(34266399-34266494)
chr1 (111-212)||(48191790-48191890)
[»] chr6 (2 HSPs)
chr6 (11-228)||(33297821-33298032)
chr6 (269-364)||(33297685-33297780)
[»] chr7 (3 HSPs)
chr7 (16-228)||(42299058-42299269)
chr7 (269-364)||(42299310-42299405)
chr7 (11-70)||(23476901-23476960)
[»] scaffold0004 (3 HSPs)
scaffold0004 (29-149)||(79541-79661)
scaffold0004 (269-364)||(77171-77266)
scaffold0004 (167-228)||(77307-77368)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 22759317 - 22759529
Alignment:
Q  16 atgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagctagagt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22759317 atgaaccaaagaaacaacatttccaagttaagatagttttgaattagagttaagggtaagtccaaagtattatatattcaggtaccatacaagctagagt 22759416  T
Q  116 ataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccatatttgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22759417 ataggagttcatgaagaacaaaatgagtagcagtcaagtgggaaaaaaaaagtatctctaaattgacaatgatgatatgaatactcattaccatatttgt 22759516  T
Q  216 aaactctttcttc 228  Q
    |||||||||||||    
T  22759517 aaactctttcttc 22759529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 22759570 - 22759665
Alignment:
Q  269 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22759570 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgttcttcttcttgcttgaaaattagtcttaattacttcctag 22759665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 1691685 - 1691902
Alignment:
Q  11 acaatatgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagct 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  1691685 acaaaatgaaccaaagaaacaacatttccaagttaagatagttttgaattagagttaagggtaagtctaaagtattatacattcaggtaccatacaagct 1691784  T
Q  111 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccata 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||| |||||||||||||||| |||||||||||||||||    
T  1691785 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctctaaattgacaatgatgaaacgaatactcattaccata 1691884  T
Q  211 tttgtaaactctttcttc 228  Q
    || |||||||||||||||    
T  1691885 ttcgtaaactctttcttc 1691902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 1691942 - 1692037
Alignment:
Q  269 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  1691942 ctctacccatcatttcttcaattcatataatatttttcttctttctaatacagcgttcttcttcttgcttgaaaattagtattaattacttcctag 1692037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 38041749 - 38041964
Alignment:
Q  11 acaatatgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagct 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  38041749 acaaaatgaaccaaagaaacaacatttccaagttaagatagttttgaattagagttaagggtaagtctaaagtattatacattcaggtaccatacaagct 38041848  T
Q  111 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccata 210  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||         ||||||||| ||||||||||||||||||||||||||||||||||    
T  38041849 agagtataggagttcatgaagaacaaaatgagtagtagtcaagtaggaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccata 38041948  T
Q  211 tttgtaaactctttct 226  Q
    || |||||||||||||    
T  38041949 ttcgtaaactctttct 38041964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 2367109 - 2367326
Alignment:
Q  11 acaatatgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagct 110  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||||||| |||    
T  2367109 acaaaatgaaccaaagaaacatcattttcaagttaagatagttttggattagagttaagggtaagtccaaagtattatacattcaagtaccatacaggct 2367208  T
Q  111 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccata 210  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||         |||| |||| |||||||||||||||||||||||||||||||||     
T  2367209 agagtataggagttcatgaagaacaagatgagtagcaatcaagtaggaaaataaaagtatatctaaattgacaatgatgaaatgaatactcattaccatg 2367308  T
Q  211 tttgtaaactctttcttc 228  Q
    || |||||||||||||||    
T  2367309 ttcgtaaactctttcttc 2367326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 2085301 - 2085396
Alignment:
Q  269 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||||| ||||||||||||||||||||||||||||||    
T  2085301 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatattcccttcttcttctggcttgaaaattagtcttaattacttcctag 2085396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 2367368 - 2367461
Alignment:
Q  271 ctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    | |||| |||||||||||||||||| |||||||||||||||    
T  2367368 ctacccatcatttcttcacttcatatcatatttttcttctttctaatattcgcttcttcctcttgcttgaaaattagttttaattacttcctag 2367461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 2085122 - 2085256
Alignment:
Q  86 tatatattcaggtaccatacaagctagagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaat 185  Q
    |||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||| |||||||||    
T  2085122 tatacattcaagtaccatacaggttagagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctctaaattgacaat 2085221  T
Q  186 gatgaaatgaatactcattaccatatttgtaaactctttc 225  Q
    |     ||||||||||||||||||||| ||||||||||||    
T  2085222 g-----atgaatactcattaccatattggtaaactctttc 2085256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 23909974 - 23910191
Alignment:
Q  11 acaatatgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagct 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  23909974 acaaaatgaaccaaagaaacaacatttccaagttaagatagttttgaattagagttaagggtaagtctaaagtattatacattcaggtaccaaacaagct 23910073  T
Q  111 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccata 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||| |||||||||||||||| |||||||||||||||||    
T  23910074 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctctaaattgacaatgatgaaacgaatactcattaccata 23910173  T
Q  211 tttgtaaactctttcttc 228  Q
    || |||||||||||||||    
T  23910174 ttcgtaaactctttcttc 23910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 34266147 - 34266290
Alignment:
Q  11 acaatatgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagct 110  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||| |||  |||| |||||||||||||||||||||| ||||| |||||||||| |||    
T  34266147 acaaaatgaaccaaagaaacaatatttccaagttaagatggttttggatttgagttcagggtaagtccaaagtattatacattcaagtaccatacaggct 34266246  T
Q  111 agagtataggagttcatgaagaacaaaatgagtagcagtcaagt 154  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  34266247 agagtatatgagttcatgaagaacaaaatgagtagtagtcaagt 34266290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 272 - 364
Target Start/End: Original strand, 23910235 - 23910327
Alignment:
Q  272 tacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  23910235 tacccatcatttcttcaattcatataatatttttcttctttctaatacagcgttcttcttcttgcttgaaaattagtattaattacttcctag 23910327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 34266399 - 34266494
Alignment:
Q  269 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  | |  ||||||||||||||||||||||||||| ||||||||||    
T  34266399 ctctacccatcatctcttcacttcatatcatatttttcttctttctaatattccctttttcttcttgcttgaaaattagtcttaactacttcctag 34266494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 48191790 - 48191890
Alignment:
Q  111 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccata 210  Q
    |||||||| |||||||| ||||||||| ||||| ||||||||||  |         ||||||||| ||||||||||||||||||||||||||||||||||    
T  48191790 agagtatatgagttcataaagaacaaa-tgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccata 48191888  T
Q  211 tt 212  Q
    ||    
T  48191889 tt 48191890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 33298032 - 33297821
Alignment:
Q  11 acaatatgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagct 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||| ||| |||    
T  33298032 acaaaatgaaccaaagaaacaacatttccaagttaagatagttttggattagagttaagggtaagtccaaagtattatacattcaagtaccagacaggct 33297933  T
Q  111 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccata 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||         |||||| || |||||||||||||||      ||||||||| |||    
T  33297932 agagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctgtaaattgacaatgatgaa------actcattactata 33297839  T
Q  211 tttgtaaactctttcttc 228  Q
    || |||||||||||||||    
T  33297838 ttcgtaaactctttcttc 33297821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 33297780 - 33297685
Alignment:
Q  269 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||  | |  ||||||||||||||||||||||||||||||||||||||    
T  33297780 ctctacccatcatctcttcacttcatatcatattttttttctttctaatattccctttttcttcttgcttgaaaattagtcttaattacttcctag 33297685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 42299058 - 42299269
Alignment:
Q  16 atgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagctagagt 115  Q
    |||||||||||||||| |||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||  ||||| |||||||||| |||||||     
T  42299058 atgaaccaaagaaacatcatttctaagttaagatagttttagattagagttaagggtaagtccaaagtattat-cattcaagtaccatacatgctagagg 42299156  T
Q  116 ataggagttcatgaagaacaaaatgagtagcagtcaagtgggnnnnnnnnngtatctctacattgacaatgatgaaatgaatactcattaccatatttgt 215  Q
    |||| ||||||||||||||||||||||||| |||| ||  |          |||||| || ||||||||||||||||||||||||||||||| | || ||    
T  42299157 atagaagttcatgaagaacaaaatgagtaggagtccagcagaaaaataaaagtatctttaaattgacaatgatgaaatgaatactcattaccctgttcgt 42299256  T
Q  216 aaactctttcttc 228  Q
    |||||||||||||    
T  42299257 aaactctttcttc 42299269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 42299310 - 42299405
Alignment:
Q  269 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||| |||||||||||||||||||||||||||||||||||    
T  42299310 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatattccattctttttcttgcttgaaaattagtcttaattacttcctag 42299405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 23476901 - 23476960
Alignment:
Q  11 acaatatgaaccaaagaaacaacatttccaagttaagatagttttgaattaaagttaagg 70  Q
    |||| ||||||||||||||||||||  |||||| |||||||||| | |||| ||||||||    
T  23476901 acaaaatgaaccaaagaaacaacatccccaagtgaagatagtttaggattagagttaagg 23476960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 79661 - 79541
Alignment:
Q  29 acaacatttccaagttaagatagttttgaattaaagttaagggtaagtccaaagtattatatattcaggtaccatacaagctagagtataggagttcatg 128  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||| |    
T  79661 acaacatttctaagttaagatagttttggattagagttaagggtaagttcaaagtattatacattcaagtaccatacatgctagagtataggagttcagg 79562  T
Q  129 aagaacaaaatgagtagcagt 149  Q
    |||||||||||||||||||||    
T  79561 aagaacaaaatgagtagcagt 79541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 77266 - 77171
Alignment:
Q  269 ctctacccatcatttcttcacttcatatcatatttttcttctttctaatatagcgtccttcttcttgcttgaaaattagtcttaattacttcctag 364  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    | |||||||||||||||||||||||||||||||||||||||    
T  77266 ctctacccatcatttcttcacttcatatcatatttttcttctttataatattctcttcttcttcttgcttgaaaattagtcttaattacttcctag 77171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 77368 - 77307
Alignment:
Q  167 gtatctctacattgacaatgatgaaatgaatactcattaccatatttgtaaactctttcttc 228  Q
    ||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  77368 gtatctctaaattgacaatgatgaaatgaatactcagtatcatattcgtaaactctttcttc 77307  T

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