View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0859_high_15 (Length: 398)
Name: NF0859_high_15
Description: NF0859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0859_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41920860 - 41921078
Alignment:
| Q |
1 |
attggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaaagcactcaagaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41920860 |
attggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaaagcactcaagaagc |
41920959 |
T |
|
| Q |
101 |
ctcgattcaggattgaagacaggtataaatcagtactattgtcttagttatttggtagcattcaactagttttttaatcatgattgtgtcacaatcttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41920960 |
ctcgattcaggattgaagacaggtataaattagtactattgtcttagttatttgatagcattcaactagttttttaatcatgattgtgtcacaatcttta |
41921059 |
T |
|
| Q |
201 |
atatttagagcatcgcaat |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41921060 |
atatttagagcatcgcaat |
41921078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 26829890 - 26829762
Alignment:
| Q |
1 |
attggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaaagcactcaagaagc |
100 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| | ||||| |||||| |||| |
|
|
| T |
26829890 |
attggtctactagaggctagtagagtgaatgaatggattgtcactgaaaaacttggagatgctttcaagggtaaagctagtggtaaaggactcaaaaagc |
26829791 |
T |
|
| Q |
101 |
ctcgattcaggattgaagacaggtataaa |
129 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |
|
|
| T |
26829790 |
ttcgatttaggattggagacaggtataaa |
26829762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 26789374 - 26789245
Alignment:
| Q |
1 |
attggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaaggctaaagcagggactaaagcactcaagaagc |
100 |
Q |
| |
|
|||||||| || ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| |||||| |||| |
|
|
| T |
26789374 |
attggtctgctagagactagtagagtgaatgaatggattgtcactgaaaaacttggagatgctctcaagggtaaagatggtggtaaagaactcaaaaagc |
26789275 |
T |
|
| Q |
101 |
ctcgattcaggattgaagacaggtataaat |
130 |
Q |
| |
|
|||||| | |||| ||||||||| |||| |
|
|
| T |
26789274 |
ttcgatttaaaattgtagacaggtaaaaat |
26789245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26816204 - 26816137
Alignment:
| Q |
1 |
attggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaa |
68 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26816204 |
attggtctactagagactagtagagtgaatgaatggattgtcactgaaaaacttggagatgctctcaa |
26816137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26783001 - 26782932
Alignment:
| Q |
1 |
attggtctactggaggctagtcgagtgaatgaatggattgtcactgagaaacttggagatgctctcaagg |
70 |
Q |
| |
|
|||||| |||| ||| ||||| |||||||||||||||||||||| || ||||||||| ||||||| |||| |
|
|
| T |
26783001 |
attggtatactagagactagtagagtgaatgaatggattgtcacagaaaaacttggaaatgctcttaagg |
26782932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 2301218 - 2301264
Alignment:
| Q |
24 |
agtgaatgaatggattgtcactgagaaacttggagatgctctcaagg |
70 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||||| |||| |
|
|
| T |
2301218 |
agtgaatgaatggattgtcactaaaaaacttggaaatgctcttaagg |
2301264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2852 times since January 2019
Visitors: 6167